G303077


Basic Information

Item Value
gene id G303077
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 626991 ~ 627441 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU344277
TTTCCCTTCCAGAAACCTCCCCTTGGAAATGTCTTAACTGTCCTAACGTGATTCAGTTTCCGGGAATGTCTTGATCATGCTGCCTTCGCCCACAAAGTTTTGTCTAAACTGTGTCACACAGCCTCAGTTTCAGGCTTCCCCTGAACCCACAAATTTTCTGTAGTCCCCTGACTACAGCTGCATTCCCCAGAAATTTGCTTTAGCTGTGTGATGCAGCCTGAATTTCCCTTCCAGATATTAACTGTTGCTTTTGCCCATGTGATCTCAATTCCCCTGAGAAACCGCTTAACCACGACCACAGAGTCAGCCAGACCAACCAATATAGTTTGTCCCGTATTTTCCTAATCTTCCAAATTTTACTCTTAAATCACTCTTTTTCACAAACTTCAATTCCCCATAAAATTTTGATTTCTCTCTTACCAGAGAGTTGTGATGCCACCTGGGTTCGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU344277 True 451 lncRNA 0.43 1 626991 627441

Neighbor

gene id symbol gene type direction distance location
CI01000091_00522844_00581962 POR.L, PORB, POR coding downstream 45029 521951 ~ 581962 (-)
CI01000091_00502517_00506846 NA coding downstream 120145 502517 ~ 506846 (-)
CI01000091_00465845_00496451 MMP28 coding downstream 130391 464996 ~ 496600 (-)
CI01000091_00400737_00412559 NA coding downstream 214432 400440 ~ 412559 (-)
CI01000091_00348777_00349430 NA coding downstream 277262 348467 ~ 349729 (-)
CI01000091_00637317_00642235 NA coding upstream 9727 637168 ~ 642235 (-)
CI01000091_00649152_00693081 DOCK10 coding upstream 20999 648440 ~ 693081 (-)
CI01000091_00712098_00724120 NA coding upstream 84075 711516 ~ 724374 (-)
CI01000091_00774690_00775320 NA coding upstream 146715 774156 ~ 776444 (-)
CI01000091_00797527_00799745 RSRC1 coding upstream 170086 797527 ~ 799745 (-)
G303019 NA non-coding downstream 236026 369963 ~ 390965 (-)
G303017 NA non-coding downstream 257826 368087 ~ 369165 (-)
G303005 NA non-coding downstream 293059 333688 ~ 333932 (-)
G303002 NA non-coding downstream 297523 329224 ~ 329468 (-)
G302970 NA non-coding downstream 385698 241060 ~ 241293 (-)
G303123 NA non-coding upstream 386019 1013460 ~ 1013753 (-)
G303133 NA non-coding upstream 425082 1052523 ~ 1052915 (-)
G303138 NA non-coding upstream 433105 1060546 ~ 1060765 (-)
G303148 NA non-coding upstream 447939 1075380 ~ 1075589 (-)
G303162 NA non-coding upstream 464197 1091638 ~ 1092387 (-)
G303047 NA other downstream 64047 474602 ~ 562944 (-)

Expression


Co-expression Network