CI01000092_00015546_00042149


Basic Information

Item Value
gene id CI01000092_00015546_00042149
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 15401 ~ 42149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00015546_00042149.mRNA
GAGCGCTGCCTTGTTGGAGTTCTTTAAGTCAAAGAGGACAATCCAGCACAACTGGCGTACCAGGTTTTTGAGAGCTCCTCATGAACTGCACGGAAGAATGGTGCTGGCTTTTGAGGTCCAGTCTTCTGGCGGCGGCCTGACTAGAGATAACATTCATCCAGCCATCCAGCAAAGGAAGACCACTCCAACCCCAGCTCATCCACAGCCTCAGAACGTTCAAATGTCAGCCAACCAGGAAGCACAATCAGATGAACTGCTGGCTCTGGCGAGCATATATGATGAAGAGGAGTTTAACAGGACAGAATCAAGGCAGAGTGCCAAGATACATCTGTGCCTTGAGCTTCCTCCTAACTTCAGACTGCAAGTCAAGGGGGAGGCATACATAGAGTGTGGCATATCCTTTCTACCCCCCGTGGTTCTGAGTTTTGAACTACCTACAGACTACCCTTCATCATCTGCTCCAGTCTTTACTCTAAGCTCCAAATGGCTTTCAAGATTCCAGATCACTGCACTTTGCAAGAGACTGGACGAACTTTGGGAAGAGAACAGGGGCAATGTGATTCTTTTTACCTGGATCCAGTTTCTAAAGGAAGAAACTCTAGAATTTCTGAACATCCAGTCTCCACTCGAGATCCAAACCATTGGTGGGCAGCCTCAATATGAATCTGGTCAGAACCAAGCTGTAGACACTGCTGTAGAAAAGAATAAAGTGCAAGAGTTGGACCAACGAGCAGTTCAAGAAATTGAGCCTCACACAGATATACTAACCCAGCTGCTGGATTTTAATGAAGCTCAGAAGCAGAAGGTGTTTGATGGCAAGGTTTTTTGCTGTGGAATCTGCTTCTCTGAGAATCAGGGTTCCAACTCTTTGCTCTTCAAAGAGTGTCAGCATGTCTACTGCAAGGCCTGTGTGAAGGAATACTTTCAGATCCAAATTAGAGATGGCAAAGTCCAGTGCCTTACTTGCCCTGAGCCTGAGTGTATGTCCATGGCCTCTCCTGCACAGGTGAAACTTCTCGTGGGCGAAGATGAATTTGCCCGCTATGACCACCTCCTTCTGAGGTCGAGTCTGAACCTAATGGCAGATGTTGATTATTGTCCACGCACGAGTTGCTGCATGGCTGTGATCATCGAGCCTGACACCAACATGGGCATCTGCCCCTCATGCCAGTTCGTCTTCTGCACACTCTGCAAGCGAACATACCATGGCCTCTCTCTCTGCAAAGAATGCTTTAAGACCAAGCAGAAAGGCTCTGCCTACGACATCCAGGGAATCACACCCAGTAGTGACGGAACACCACGAGGTTTTGCCAATTGCCATAAACTAAGAAGCATAAGAAGGAATGTTCAAATGTCAGCCAACCAGGAAGCACAATCAGATGAACTGCTGGCTCTAGCGAGCATATATGATGAAGAGGAGTTTAACAGGACAGAATCAAGGCAGAGGGGCAAGATACATATGTGCCTTGAGCTTCCTCCTAACTTCAGACTGCTAGTCAAGGGGGAGGCATGCATAGAGTGTGGTATATCCTTTCTACCCCCCGTGGTTCTGAGTTTTGAACTACCTACAGACTACCCTTCATCATCGGCTCCAGTCTTTACTCTAAGCTCCAAATGGCTTTCAAGATTCCAGATCACTGCACTTTGCAAGAGACTGGACGAACTTTGGGAAGAGAACAGGGGCAATGTGATTCTTTTTACTTGGATCCAGTTTCTAAAGGAAGAAACTCTAGAATTTCTGAACATCCAGTGTCCACTCGAGATCCAAACCATTGATGGGCAGCCTCAATATGAATCTGGTCAGAACCAAGCAGTAGACACCGCTGTAGAAAAGAGTAAAGTGCAAGAGTTGGACCAACGAGCAGTTCAAGAAGTTGACCCTCACACAGATATACTAACCCAGCTGCTGGATTTTAATGAAGCTCAGAAGCAGAAGGTGTTTGATGGCAAGGTTTTTTGCTGTGGAATCTGCTTCTCTGAGAATCTTGGTTCCAACTCTTTGCTCTTCAAAGAGTGTCAGCATGTCTACTGCAAGGCCTGTGTGAAGGAATACTTTCAGATCCAAATTAGAGATGGCAAAGTCCAGTGCCTTACCTGCCCTGAGCCTGAGTGTATGTCCATGGCCTCTCCTGCACAGTTGAGTCTGGACCTAATGGCAGATGTTGTTTATTGTCCACGCATGAGTTGCTGCATGGCTGTGATCATCGAGCCTGACACCAGCATGGGAATCTGCCCCTCATGCCAGTTCGTCTTCTGCACCCTCTGCAAGCGAACATACCATGGTCTCTCTAACTGCAAAGAATATGAGCTTTGCAGGTTGAGGGATGAGTACCTCGCTGCCAGTGAAAAGGAGAAGGAACAGCTTGAAAAGAGTTATGAAAAGCAGCTAATTCAAAGAGCAACTGATGAGTCTTTAACTGAAGACTGGCTGAAGGATAACTCCAAACAGTGCCCTTCCTGTGGTGCTAACATACAGTGCTCGACAGAAGGGAACCCTACAGCCACTACAGAGACTCTAGCTCTCCGTGCTATACTGATGAATAGTGGCTTTTGCCGACATGTTAATTAAAAAATATGACAGATAACTGATTGATGACAAATATTTTTTTTTAAATCACTCATATGAACTGAAACTTTTTTAATAGTGCTGAACTTTATTAGAAAATGAACAATAATGACTTAAACATGTGAATGTTTGTAACTATTAAAATAAA

Function

NR:

description
LOC794117 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00015546_00042149.mRNA True 2714 mRNA 0.46 12 15401 42149

Neighbor

gene id symbol gene type direction distance location
CI01000092_00103480_00114306 NA coding upstream 60019 102168 ~ 114742 (-)
CI01000092_00116452_00128007 NA coding upstream 73186 115335 ~ 128007 (-)
CI01000092_00156990_00162891 MLNR coding upstream 114841 156990 ~ 162891 (-)
CI01000092_00174874_00180333 FNDC3A coding upstream 132725 174874 ~ 180333 (-)
CI01000092_00237358_00269420 NA coding upstream 194163 236312 ~ 271283 (-)
G304004 NA non-coding upstream 37364 79513 ~ 86265 (-)
G304012 NA non-coding upstream 49486 91635 ~ 93404 (-)
G304050 NA non-coding upstream 224515 266664 ~ 266947 (-)
G304052 NA non-coding upstream 239086 281235 ~ 281438 (-)
G304053 NA non-coding upstream 239370 281519 ~ 282555 (-)
G304368 NA other upstream 1013155 1055304 ~ 1055722 (-)
G304369 NA other upstream 1016176 1058325 ~ 1058920 (-)
CI01000092_01086701_01097333 CLRN1 other upstream 1044513 1086404 ~ 1097333 (-)
G304459 NA other upstream 1189751 1231900 ~ 1232292 (-)
G305772 NA other upstream 2682445 2724594 ~ 2724944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008266 CABZ01061592.1 coding NC_007126.7 CM002899.2 3808996 ~ 3816757 (+)