CI01000092_00103480_00114306


Basic Information

Item Value
gene id CI01000092_00103480_00114306
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 102168 ~ 114742 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00103480_00114306.mRNA
ACCTGTTTACTTGGAAAAATTTTAATGCCAACACATTTGGTGTCATTGGTGTAAATATGAATCACAGTCGTCAGCGGAAGACAATTAACTTTACGACCTCAGCAAATTCATGACCTACACTCACAGTTCCTGTATGTAACATCCCAGCTGTTTCATCCCTTCAGTTTCGTTTCATTGCACACAGACACCCGCAACTGAAATACGAGACACACTTTAACACTTGGAGTTTACCTATATATCATTATTAGCCGCATCCACATTGAGAAGAAATCTGGAATCCGCTTATTTATTCTTTATTAACTAAATGTAACAGTTGTGAACACGGCATTGTTTTCTAACCACAACACAAACCAGGTGAATAGCGTCTTTACACGTTGCATCAGTCAGTTCCGGGTGTAATTCACAGGTTGTCTGTTGGAATAGTGACTATGGAAGTATGAGCGACGCGCTGGAGAAGACTTTTGAAGTTGTCTGTGACAACAATAACGTCTCGGGTGGCCAAACGATTGAGTTGATTCCAGGAAATGGAGCTTGCACATACCACGTTGGGTCGGGGACAGATGAAGTTTCTCATCTTCTGTCAACACCACAGGTCACTGAGAACAATAGGGAACAGCACAGTGTAGATGGAGTTGATGTCGAAAATGATTCTTCAACTGAAACCTCAAAGTGGCGAAGGGAGCTGCAGAGCCTGAAGACAGAACTGAATGAGGTGGTGGTGTGGAAACTCAAACTATGGGTGGTGATACTTCTCATCTTCTTAGTCATCACTCTGATTATTGGGATCTCATTCATTTTGTGTGCAGTTATTGATGATGATGGGGATGAAAATTATGACAAATCATCATTCGTGGTGGTACACTTCTTCAAAGGGAAATTTACTCTGGACAACAGCAGCACTTCATACTCTCTGGACCAAGAGACACTGTTAGAGCAGCTGGAACAGAAGCTAACAGGAGTCTACAGTTCTTCTCCTGCGTTGGAACGGTACTTCTCTAATGTCACCATAAACCATCTCCAGGACACTACAGCCCAGTTTAAGATAAAGTTCATGATGCCTTCAGAACATGAGGAGTTGCTACGCTACACTCTGAGTCTAAAGATGGTTAAAAATGTGCTTCTCCAACACTTGTATGATCAGGACACTGAAGACCCTCTCTATATCATACCAACATCACTCAGCATGGTAGTCCAGCAGCTTGAGTTGATATTTGAAATCAACACAACTGTCCCTGAAGCCTTGAAGCCTGATCACACTCTACAAGCTCTACTCTACTATTTGACAAGTTTCATCAGTTTGGGAAGTGTTTCTTCAGTCATGGAGCAGCGTCGCCTGAGAAGAACCAGGACTCTTTCCACACACCTGAGGCGATTCTGGGTGGAGGAATCCAGTCAAGAGCGCTGTGAGCTTTCATGGCTGGCAGCTGAAGAGTCTGTCTCCATCCACGGCTACAGCATGCAGGGCTACCAGGACATTTACCGTTCTGTGGCAGAGCCCATGATGAAGACACGCTATGGTCGGCACCGTCCCTACAGCCTCGAGCTGGGACTGAAGATTAAGCAGTGCCTGTGGGACACTCTCAAGCGCCCTTCACGAGACAGAGCAGCCTGATGGACGTGTCCTCATCACTGAGAGCTTCTCCACATTAAGAAGAAGCTTCGCTCCTCATGTCCATGTGGACATCAGTGAAGAGCCGCTGCCAGAGGAACCGCCAAGAAAGAAGCCCAGACACTGAGTCATCACAGCAGGGCGACGTATGTACATACTGTATATAGTTATAGAGTACGTTTATAGTTTTATGAGTAAGTTTCAGTTTTTAAAGTTTTGTTTGAGTACGTTTTAGTACGTTGCTGTGTGTTGCAGGATGTTTTTGTCATTGCACTGATATGCGGTTCCTCGGTTGTTTTAAACAGATTTTAGTCTTTTGCTACGTGGTTGTCGGGAGGTTTCGGGCAGTTTTGTTGTTGACATGCGTTTGCCTAGGTTTTCTGAATGGTTGTTATTGTGTTGCTGTGCGGTCGCTGGACTCTTCAGAGTGGTTTCTCATGCTTTGCTACATGGTTGTTAGGATGTTTGTGTGGTTGGTGGATATGCGGTTACTTTTAAAGAGTTAAGTTAGGGTAGGTTAGGGTCCCTCACACGGTTTGCAGCTTGACGTGCTGTGAGGGCTTGTGTGCATCAGTGATGCTGAGAGTGACGCCACTGCTACTTCACAACTACTGAGGGTCACCCATAGTGGACAGGTCTCAGCTGAGATGCCAGACCAAGACAAACCACCTGATTCTCAACAGCAGCAAATTGGCCAGAAGATCACAGTCTCGTGACAACGGCAACAACATCAGAATTACCTGAATGGAAGAAACTTCACTCTGATTATAAATGTGGAAGTCACAGATGGATTGATGGAAGCAACTGTTCGATAATATTGGTAAAGGTGTACGACAAGTCTGCATTTTTTCTTCAGCACTCGCCAATCACATTTGAGGACTAGTAATTAAATAATGCACTATAATATAATATAATAATTTCTTAAATGCTTGTATGTGTGATTTGCACATGATCACATAAATACTGGTGATTAGAGCAGTGAAAATGGATAAATTATTTAAATACAACAATTACTGTTTATAAGAGGTAAACACTATCACAGTAATCTGAACTTCATAAACATACATTTTAAAAGTGCTGAAATTACTTTTTATTTAATATTGTTCCTATTAAAATGCATTTATTTCCTTCTTAAGAAACCAAAATGTAAATGTTTTATTAACAGTTTTCAAACAAAGGCTTACTCAATTAAAAATGAAATATACTGAAAAACTAAAACTATCAAACACTACTTAGTTTTTTCAATCTAAACAACAATCAAATCTCAAAACTCTCAAAATGTTGCTATGTGGTTGCAAAATGTGAAAATAATAAA

Function

NR:

description
TPA-induced transmembrane protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00103480_00114306.mRNA True 2924 mRNA 0.42 9 102168 114742

Neighbor

gene id symbol gene type direction distance location
CI01000092_00015546_00042149 NA coding downstream 60019 15401 ~ 42149 (-)
CI01000092_00116452_00128007 NA coding upstream 593 115335 ~ 128007 (-)
CI01000092_00156990_00162891 MLNR coding upstream 42248 156990 ~ 162891 (-)
CI01000092_00174874_00180333 FNDC3A coding upstream 60132 174874 ~ 180333 (-)
CI01000092_00237358_00269420 NA coding upstream 121570 236312 ~ 271283 (-)
CI01000092_00271933_00272986 NA coding upstream 156646 271388 ~ 272986 (-)
G304012 NA non-coding downstream 8764 91635 ~ 93404 (-)
G304004 NA non-coding downstream 15903 79513 ~ 86265 (-)
G304025 NA non-coding downstream 79720 22159 ~ 22448 (-)
G304022 NA non-coding downstream 83544 18422 ~ 18624 (-)
G304021 NA non-coding downstream 84752 17188 ~ 17416 (-)
G304050 NA non-coding upstream 151922 266664 ~ 266947 (-)
G304052 NA non-coding upstream 166493 281235 ~ 281438 (-)
G304053 NA non-coding upstream 166777 281519 ~ 282555 (-)
G304057 NA non-coding upstream 222273 337015 ~ 337687 (-)
CI01000092_00409098_00411916 STOML3A, STOM, STOML3B, STOML3 non-coding upstream 291522 406264 ~ 411916 (-)
G304368 NA other upstream 940562 1055304 ~ 1055722 (-)
G304369 NA other upstream 943583 1058325 ~ 1058920 (-)
CI01000092_01086701_01097333 CLRN1 other upstream 971920 1086404 ~ 1097333 (-)
G304459 NA other upstream 1117158 1231900 ~ 1232292 (-)
G305772 NA other upstream 2609852 2724594 ~ 2724944 (-)

Expression


Co-expression Network