CI01000092_00174874_00180333 (FNDC3A)


Basic Information

Item Value
gene id CI01000092_00174874_00180333
gene name FNDC3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 174874 ~ 180333 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00174874_00180333.mRNA
ACCCTCCCAAAGACAATGGCGGCTCAGATGTGACGAAGTATGTGGTGGAGCTGTCTGAAGGGTTAAGTGGTTCTTCTTGGAATCAGGTTTACAGCGGTTCGGCTATGGAGTGTGTTTGTGATGGTCTGAGCCCAGGATGTTCATACCAGGCTAGAGTCCACTGCATCAGTGTGGGAGGAGAGAGCCCGTTGACGGAGGCTTTGCAGGTCCAAACGCCACCTGTTCCTCCTGGTCCATGTCAGCCGCCCAGGGTCGTGGGCAAACCCAAAGCGAGAGAGGTGCAGATACGCTGGGCGCCCCCTCAGGTGGATGGAGGAAGTGTAGTGTCTTCGTACAGCGTGGAAATGTTCGCTTCCCAGGTGGAGGAGGGCAGGGAAGTGTACCAGGGCTCTGAACTGGACTGCACAGTGGGCAGTTTACTGCCCGGCAGGACCTACGGCTTCCGGATCAGAGCTGCCAACAAAGCTGGGTACGGCCCTTTCTCAGAGCGCTCTGAGGTCACGACAGGTCCGGGGGCCCCTGACACGTGTCGGCCCCCTCATGTCAACTGTAAATCACCCACGTGTGCTGTGGTCAGCTGGGAG

Function

symbol description
fndc3a Acts upstream of or within medial fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cloaca; median fin fold; notochord; and tail bud. Orthologous to human FNDC3A (fibronectin type III domain containing 3A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00174874_00180333.mRNA True 584 mRNA 0.58 5 174874 180333

Neighbor

gene id symbol gene type direction distance location
CI01000092_00156990_00162891 MLNR coding downstream 11983 156990 ~ 162891 (-)
CI01000092_00116452_00128007 NA coding downstream 46867 115335 ~ 128007 (-)
CI01000092_00103480_00114306 NA coding downstream 60132 102168 ~ 114742 (-)
CI01000092_00015546_00042149 NA coding downstream 132725 15401 ~ 42149 (-)
CI01000092_00237358_00269420 NA coding upstream 55979 236312 ~ 271283 (-)
CI01000092_00271933_00272986 NA coding upstream 91055 271388 ~ 272986 (-)
CI01000092_00335844_00338581 NA coding upstream 154993 335326 ~ 338581 (-)
CI01000092_00409098_00411916 STOML3A, STOM, STOML3B, STOML3 coding upstream 228520 406264 ~ 411916 (-)
CI01000092_00418628_00428488 SLC25A15, SLC25A15A coding upstream 237489 417822 ~ 428620 (-)
G304012 NA non-coding downstream 81470 91635 ~ 93404 (-)
G304004 NA non-coding downstream 88609 79513 ~ 86265 (-)
G304025 NA non-coding downstream 152426 22159 ~ 22448 (-)
G304022 NA non-coding downstream 156250 18422 ~ 18624 (-)
G304021 NA non-coding downstream 157458 17188 ~ 17416 (-)
G304050 NA non-coding upstream 86331 266664 ~ 266947 (-)
G304052 NA non-coding upstream 100902 281235 ~ 281438 (-)
G304053 NA non-coding upstream 101186 281519 ~ 282555 (-)
G304057 NA non-coding upstream 156682 337015 ~ 337687 (-)
G304368 NA other upstream 874971 1055304 ~ 1055722 (-)
G304369 NA other upstream 877992 1058325 ~ 1058920 (-)
CI01000092_01086701_01097333 CLRN1 other upstream 906329 1086404 ~ 1097333 (-)
G304459 NA other upstream 1051567 1231900 ~ 1232292 (-)
G305772 NA other upstream 2544261 2724594 ~ 2724944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008949 fndc3a coding NC_007126.7 CM002899.2 2987593 ~ 3078600 (-)