CI01000092_00237358_00269420


Basic Information

Item Value
gene id CI01000092_00237358_00269420
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 236312 ~ 271283 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00237358_00269420.mRNA
ATACACTAGTAATTTATTGTATTTTTGTAAAGACTTACTTGACAGAAAGTGCTCACATGTGTACAGTTCAGTTAAAGTACAGATTTAGTACTGGTAATATATTTCCCAGTCAAAAGTTTTGATGTCTATCACTTATTGTTCATGTCATAATGTTGTAAATGTTTCAAAGATTGTTTTTACTGCTTCTATCTATCTATCTATCTATTCAATGTAACATAACTGTAAATAATACAATATTTCTGAAACTGATCTGCCTATCTATGAAATAATTAGTATTCTAATTATTTCTCATTATGCAGTTGTTTATGATATGATTTTTTTTTTTACTACAACTGTTATAATTGTATTAAATGTATTAATTATATGTGTGTCATAAATCTATGATTATAAAAAAATTATAGCAACATTTTGTGTGATTACTGCACCTATAGGTGAGGTTCTTTTTTAATCCACCCGTGTTTTATTGCTTGATTGCCCCATGTTATAGAATTATTTCCAAATTACAATTGTTTACTTAACTAAGGCTGGACTCAAGCTGAATTTGGAGGAACTGTCCAAACATCAACAATATATTCTGCTGTTCTGCTGTGCACAGGTTAAAAAAAAAAAGTTATATCAGATATATCATATTTATAAATATTGTGTTTACTGAAAAGCAAAAATTTTTCAATACAACATCTGGAAGTATTACAAAAGCAAAATATTCACCGGTTAAACCAGCTGGTCGAAATGCTTGAATATTAGCTGTAACAGCATCAGTGTTCTTTTATATCATGAATCAGATAAATGCACAACAAGTTTCACTTTTGCACACCAACCCGCCAAAAGGAAATTCTGATTTTACCTTTTATCACTTGAATTCCTCAAAACATTAGCTGCAGCTCCACCTGCAGGGCGCATCTTATCATCACTTCATAGATCCCTCCCGTTTTTAGAAGACTCAAAAATGAACCTCAGTGTGAAACTAGTCTGTTTTTGAAATGGTTACAGTTTTTCTTAGTCGCTTTGGTACATTTCTCCTTAACATTTGCAAACCAGTTCATTTCTCGAAACAATTCGTACAAACAGCACCACACAATGGTCTACCTGCAAAAGCCTGTTGGCCTAATAGTAAATATTATAGTGTTTTTGAACCATACTATAGTAAAGTACTTGAATTAATTCGTTGTGGTAATTCTATAGTTGCTGTGGTAATATAACAACTATAGTAATATAAACAAATTACTTTACCCAATACTGTACTAAGTTTTCTACAACTATAGGGTATATTATACTACAATAGTCTACTAAAGTGAACTATTTATTACAGTTAATCAGTTCACTATAGTTAATACTACAGTATGTTGTAGATTTCTTTAACAAAGTGTTGTAAATACTATAATATATACAGTATACTACAATATACTATAGTATGGTTCAAAAACACTATAGTATTTACTATAAATTACTATAGTATTTTTTCATGTGGGTATAGAAAATATACTTAACGCATTATGACAACTAGTTCAACCATTTTGCATTTAATGACTTATGCAATGAGCTAATGCCTAGATGTTTTGAGGGGTAAGACTATTCAACAGGGAACCAGTATAGGCTAATTTTTAAGCAACATGACATAAGCAATTGATAACGTAGGAATCAGCAGACAACTGTAGCTATAATCAATTGCATGGATGTGCCAAAGCATTTGCAACTTGTTCAAAAGAAATTGCTTTTATGATGTGCACAGATGACTAGATGATGTGAAGTTTGAACAAGTAGTTTTGAGAATTTCAGGTGAGATCTGAGAAATGTACCAAAGAGACTGAGAAAAACGGCAACATTCATGATGCAGACGTCAGAGGCACGAGTTTACACGACGACATGGCGCCCTCTGCCGGTTCACATAAGCGGTCAACACTGACAGTTGAAGAAATGGTGCAGTTTTTACATCATTATCTCACTCATCAGTTTGTTACCATATTTCAGCAAAACAGGAGCAAGCAGTGCCTCTTCTGTAGTGTGGATGAGGGAGTCATGGCTGAACACACCTCCCCACTGGAGTCCGGCCAGTTGCTCAGCCCAGACGTCCCAATGCTCACCTCCCCGCCGCCCCCTCCGCACCCGGCCAACATCGTCAACGGAGATGGATCACAACAGTGTCACTATTCCATCATCATAGACGAGGAGTGGTGTAACTCCCAAAGTGTTGGCATCGTTGTGGCTCTGGGCATTATTTGCGTCACTGACCCTGACCTGGCACGGAGACGTGTGATAGTGGGAGTAAAGGCCACGGAGAGGAGCTGTCCATCCGTCGCTGGCCCCTGGGGCTGTCATGGCGAGAGTTTTTATGTGGTCTTCAAACACTTTGGTTTTATGTGCATGAGGCTTTTTGAAGCAGCAGTCAGGCTTACCTTAAGAGCAAAGACTCTAAGCAGAGTAGAATGGGCCACTCTGCAGGAAGTCTGTGCTGGATAAGAACAGAGTGATCTTAGTTGTGCCGAAAAGCCTCTCATATAAATGGCTCTAAATCGACCAGAAAGCACTGATAGGTTTTTGATTCACTTTCTTTTTGGTCTCGTACGCTCTTTCATGTTAACAAGAAGTGGAAGCGAAAGCCAGTCATTTTTCTCGCATAAAGCTGGCAAAATTTTTACTTTTTTAGGTCTGTAAATGCAGGGCTGTTCCAATATAATGAATATTGATATATGTCATTTATTCTTAAAATTGTATTTATTTGTGCATTCTTGTTTCATTTTACAGTTCACTTAGGAAAGTAACAGGTTGTCTAAATAAGGAGAACTCTGAAACTAAAGTCCCCGCTATTCTTCAAGTGAAATCGAAGAACGAACTGATGTGACGTCATTTTGAACAAATTCAGGCCAAAACCAAGTTCATTTTGGGAGTTTGAAACAGCTTGCCAAAGTGAACTTTTCGGAAAAGTTCACTTCGACTGTTAAACACCTTTGTACAACCATTGGTCCGTGGTAATTATGTAATAGGTAGATGTGCGCGAAGGTTTCACCTTCTTTCATGTGGAAATCTTTTCCGATTCATTTCTCTTGGAGGTCAGATGTCCTTGAGTGAAAACATGAACACATTGGAGAGGTGCTTGGTAGTAGAAAATGAAGTTGTACTTATGATGAAATGAGACACTGACACTGTTTTTCATGTTTAATATGGTAAAGCTGCTTGATTTTAAGCAATCTATTGTATAAAGTGCTATATAAATAAACGTGACATGACTTTACTAGAGTGCCCAAATTGCAGAGCTTGTGCAAACAAACATATCCACGTTGCTATGATCAGATGCTTTTTTATGCTTTATTAAAATGTTTGCTGTTTTCTCAGATTTGTTGTTTTTGTTATCGAGAGTTAAGCATGCAGCACATATTTACATATTCATCTAAACGGTGCTCTCAGCAGTGTTGACGGTGTCAGATGTTCGATAACAGTTTACTGCTGCTCACGTATTTCGAACTTTGTTTGACCCCTACATGAAGAACGAAAAAGGTATAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00237358_00269420.mRNA True 3503 mRNA 0.36 4 236312 271283

Neighbor

gene id symbol gene type direction distance location
CI01000092_00174874_00180333 FNDC3A coding downstream 55979 174874 ~ 180333 (-)
CI01000092_00156990_00162891 MLNR coding downstream 73421 156990 ~ 162891 (-)
CI01000092_00116452_00128007 NA coding downstream 108305 115335 ~ 128007 (-)
CI01000092_00103480_00114306 NA coding downstream 121570 102168 ~ 114742 (-)
CI01000092_00015546_00042149 NA coding downstream 194163 15401 ~ 42149 (-)
CI01000092_00271933_00272986 NA coding upstream 105 271388 ~ 272986 (-)
CI01000092_00335844_00338581 NA coding upstream 64043 335326 ~ 338581 (-)
CI01000092_00409098_00411916 STOML3A, STOM, STOML3B, STOML3 coding upstream 137570 406264 ~ 411916 (-)
CI01000092_00418628_00428488 SLC25A15, SLC25A15A coding upstream 146539 417822 ~ 428620 (-)
CI01000092_00506401_00508318 NA coding upstream 234456 505739 ~ 508524 (-)
G304012 NA non-coding downstream 142908 91635 ~ 93404 (-)
G304004 NA non-coding downstream 150047 79513 ~ 86265 (-)
G304025 NA non-coding downstream 213864 22159 ~ 22448 (-)
G304022 NA non-coding downstream 217688 18422 ~ 18624 (-)
G304021 NA non-coding downstream 218896 17188 ~ 17416 (-)
G304052 NA non-coding upstream 9952 281235 ~ 281438 (-)
G304053 NA non-coding upstream 10236 281519 ~ 282555 (-)
G304057 NA non-coding upstream 65732 337015 ~ 337687 (-)
G304126 NA non-coding upstream 220896 492179 ~ 492631 (-)
G304368 NA other upstream 784021 1055304 ~ 1055722 (-)
G304369 NA other upstream 787042 1058325 ~ 1058920 (-)
CI01000092_01086701_01097333 CLRN1 other upstream 815379 1086404 ~ 1097333 (-)
G304459 NA other upstream 960617 1231900 ~ 1232292 (-)
G305772 NA other upstream 2453311 2724594 ~ 2724944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2214692 NA non-coding NC_050570.1 CM025857.1 23918025 ~ 23918718 (-)
tiger barb (Puntius tetrazona) LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 misc NC_056713.1 CM032082.1 3751979 ~ 3773814 (-)