CI01000092_00271933_00272986


Basic Information

Item Value
gene id CI01000092_00271933_00272986
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 271388 ~ 272986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00271933_00272986.mRNA
AATTCCCAACCCAACCATGGGGCATCTGAATGAAGGGAATAACACGAACTGCTCCATCAGTGAATTCAAGCGCACCGTCTACCCAGTTGCCTATCTGTTCATCTTTTCCCTTGGGCTTATTGGAAACCTCATGTCCCTGTTTTTCTTCATTTCCTCTTCATTGAGAAGAAAAGCATATTTTTCCCCAGTCAATATCCTCATGCTCAATCTTCTTCTATCTGATCTGATGATGGTGTGCTCGTTGCCCTTCCGAGCTGCTTACTATCTCATGGAATCCGACTGGGCCTTCGGAGACGTCACCTGTCGGATCATGTCCTACGTCTTCTACATCAACATGTACGGCAGCGTCTACTTCCTCATGGTTCTGAGCATGGTACGCTTTGTTGCCATCGTGAAGCCGTTCACATACGTGCGCTGGCAAAATTCTCGGAGAGCCTGGACGATAAGCATCGTCATCTGGCTGATTGTGTCCCTGACGTCCATCCCGCTTCTGGGAGCTGGAACTTCGATTGAGTCTGGACGAATCAAATGCCTGGAACTGAACCAGTCCCATTTGAAGACCATTATCATGTTGAATCGATGCGTCTTGTTTTTAGGCTTTGTTATGCCCTTCACGGTCATCTCGGTCTGTTACATTTTTGCGGCCTTGTATCTGCTAAAGCTCAAGAAGACCAGGCAGAATCAAAGATCTCAGTTGAATCACAAGAAGTCCTGTTCTCTCGTGATCATAGTTCTGCTGATTTTCCTCGCATGCTTTATGCCGTATCACGTCGTCCGAACTCTGTTTTTGGAGGCGGAGATGGATATTAGTAACAAAGGTTACGGAGAGTCCTGCCATTATATTCAAAGCCTGAGAAAGGCCGCGGTCATCACACACTGTCTGGCTTCGGGAAACAGTTGCCTGGATCCGCTGCTTTTCTTTTTCGTAGGGGAAAACTTTATTAGCTTTTGGAGACAGCATACACCCAGAAGACAGAGTTGTATAATTGAGCAGAATGTGAAAGTGTCAGAGAAGATAAACAACGATATAGAGCGACGATTCAGACGGATATAGAGTGTTTGGAACCTGTCGGGACTTGAGAGGGAAATTCCTAAAAAAAAAAAACTATATCTGTGTTGGATCTGTGGTCCCATGCTGGAAGAACTCGATTAACCTCCAGTAAGCCACAATAGCTTTGTTTCCATTCAAAGTTGTGAACTGAACTAATGTGAATATTGCATAAAACATTATAATAGCGAATAAATCAGTGTTTGTGTAATTTACCAAATCCTTGTGAGGACAGACTTCGGCTCTGGAATTTCAGAATGACTAAAACAACTCAAATATTACTTAAATATTTATAATATCTCAGTTGTTTCTCCTAGAGATTAAATCGAGCCTTCTGCTTTTCGGATGTTTCTCCTGAGGAAAAAGATGTGTTTTAGACAATGTCTCACAATGTCTAAATTTTATTGTATGTCAACATTGGCTCATTTTTTTCTTTTTTTTTTTTTTTTTTTACAGATAGATAACCCCAAAATCAACCTATTAACTTTTGTTGTATGGAAAAAAACGTTTCCTTTGTGTTTTTGAGTGTACTATCCCTTTAAGGTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00271933_00272986.mRNA True 1599 mRNA 0.42 1 271388 272986

Neighbor

gene id symbol gene type direction distance location
CI01000092_00237358_00269420 NA coding downstream 105 236312 ~ 271283 (-)
CI01000092_00174874_00180333 FNDC3A coding downstream 91055 174874 ~ 180333 (-)
CI01000092_00156990_00162891 MLNR coding downstream 108497 156990 ~ 162891 (-)
CI01000092_00116452_00128007 NA coding downstream 143381 115335 ~ 128007 (-)
CI01000092_00103480_00114306 NA coding downstream 156646 102168 ~ 114742 (-)
CI01000092_00335844_00338581 NA coding upstream 62340 335326 ~ 338581 (-)
CI01000092_00409098_00411916 STOML3A, STOM, STOML3B, STOML3 coding upstream 135867 406264 ~ 411916 (-)
CI01000092_00418628_00428488 SLC25A15, SLC25A15A coding upstream 144836 417822 ~ 428620 (-)
CI01000092_00506401_00508318 NA coding upstream 232753 505739 ~ 508524 (-)
CI01000092_00508717_00509840 NA coding upstream 235608 508594 ~ 510328 (-)
G304050 NA non-coding downstream 4441 266664 ~ 266947 (-)
G304012 NA non-coding downstream 177984 91635 ~ 93404 (-)
G304004 NA non-coding downstream 185123 79513 ~ 86265 (-)
G304025 NA non-coding downstream 248940 22159 ~ 22448 (-)
G304022 NA non-coding downstream 252764 18422 ~ 18624 (-)
G304052 NA non-coding upstream 8249 281235 ~ 281438 (-)
G304053 NA non-coding upstream 8533 281519 ~ 282555 (-)
G304057 NA non-coding upstream 64029 337015 ~ 337687 (-)
G304126 NA non-coding upstream 219193 492179 ~ 492631 (-)
G304368 NA other upstream 782318 1055304 ~ 1055722 (-)
G304369 NA other upstream 785339 1058325 ~ 1058920 (-)
CI01000092_01086701_01097333 CLRN1 other upstream 813676 1086404 ~ 1097333 (-)
G304459 NA other upstream 958914 1231900 ~ 1232292 (-)
G305772 NA other upstream 2451608 2724594 ~ 2724944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G134345 NA non-coding CI01000026 null 12503262 ~ 12604181 (+)
tiger barb (Puntius tetrazona) G103404 LOC107699805 non-coding NC_056713.1 CM032082.1 3481163 ~ 3485630 (-)