CI01000092_00579690_00648591 (COG6)


Basic Information

Item Value
gene id CI01000092_00579690_00648591
gene name COG6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 579190 ~ 648591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00579690_00648591.mRNA
ATGTTCAGCACTTGTTGCAGTGGGAAGATTTTCTGGGTACTCAAAACAGCTTCCTGGAGGTTGACGTGGATGTTGATGATGGCAGAGACTAAAGCAGATCTGTCAACTGATGCTTCAAACCTTCACATCTCTAACAGCAGCGGGAATGTGTCCTCACAGACCAACAACCCTCTGTCCAGAAAACTCAACAAGATCCTGGAGACCAGGCTGGAAAATGACAAGGAGATGCTGGAAGCGTTGAAATCTCTCTCCGTGTTTTTCACTGAGAACAGTCTGAGAACCAGGAGGAACCTGCGGGGAGACATCGAGAGACGCAGCCTGTCCATCAATGAAGAGTTTGTACGGATATTTAAAGAAGTGACTGAGGAGCTGGAGAGTGTTCATGAAGATGTTCAGGCCATGAGCTCCTGCTGTGAAGAAATGACCAACAGATTAAAGGCAGCCAAAGAACAAACCCAGGACTTGATTGTGAAAACCAACAAACTTCAAGGAGAGAAGGAATTTGGCTCTAGGTCTGAGACTCAAGAAGCGAGAGTCCATCGTATCTCTGACCTTGCGGAACGGCCCTTGATTTTGGCACCAAAGGAAATGCTGACAGCTGTGATGGACAGCTGGTGTCTCCACGCTCTACTACCATTCACCCTGTACTCGTCCAGCAGGAGAGTTTGTCTAAATCCACAGAGTGACATACAAAGACAGACAGGGACATTGCCTGTCTCAGTGACATTTTCATCAGCCAGATGGGATTGTGCCTGCTTGTCCAGCTGCTTTTTAACCTTGCCTGACCGTGTCTGTCCCCAGAGGGACAGCTGTGCAAGGGACAGTCATCGGTTGGAGGTTCGAGCTCAGGTGGCCCAGGCATTCCTGTCAAAGTTCCAGCTGTCCGTCGCCGAGATGGCAACGTTACGCTCCGCACGAGATGGACCCATCACAGAGGACTTCTTCAGAGCGCTGAACCGTGTGAAGAACATCCATGAAGATGTGAAGGTCCTACTGAGGACCAACCAGCAAACAGCCGGGCTGGAGATCATGGAGCAGATGGCTGTGTTACAGGAGACGGCATATGAGCAGCTCTATCGCTGGGCTCAGAATGAGTGCAGAGGGTTGACTCAGGAAACATGTGATATTCCTCCTGTGTTGAGTCAGGCTATGGAGTCTCTCCAGGATCGGCCTGTTCTTTATAAGTACACACTGGATGAGTTCGGAACGGCGCGGCGTTCTGCCGTGGTCCGAGGCTTTATTGACGCCCTGACCCGCGGAGGCCCGGGTGGCACCCCAAGACCCATAGAGATGCACTCTCACGATCCGATGAGGTATGTTGGGGACATGTTGGCCTGGCTTCACCAAGCCACAGCCTCAGAGAAGGAGCACCTGGAAGCTTTGCTCAAGCAGGTTACTGTGCCAGGGGTTGAAGAAAACATGCAGGAAGTAGTTGGCCACATCACCGAAGGAGTGTGCAGGCCACTCAAGGTGCGAATCGAGCAGGTGATCATTGCAGAGCCCGGTGCTGTTCTTCTGTATAAACTCTCCAACCTGCTCAAGTTCTACCATCACACCATCAGTGGCATCATGGGTACCAGCGTTTCATCTCTATTGATGACCATCGATGAGATGCACATGCTCAGTAAGAAGATGTTCTTCAACAGTCTTAGTCTCCATGCCAGTCGCCTTATGGATAAACACTCTAATCAAATCACCTCAGGCTTAGGACGTTACGTATCACTCCCTGACGTCACTCAGTGCCAGGAACACCAGGCCAAGCTAATAAGCGATATTAGAGGCAGCAGAGCCTTAGGTAGTGTTCGCGTAGCAGGGTGTTTATTAGTCAGCCTTCAGAGAGAGGTTTTGGCCTCCCATGATTCATCAGTTCTGCCTCTTGATGCCCGTCAGGCTGACTTTGCACAGGTGTTGTCCTGCATCCTTGACCCATTGCTGCAGCTCTGCACGGTATCAGCCAGTAACCTGGGCACAGCAGATATGGCCACCTACATGGTGAACTCCCTCTACATGATGAAGACCACACTGGCACTCTTTGAGTTTACAGACAAACGCTTGGAAATGCTGGAATTTCAGATTGAGGCTCACTTGGACACTCTAATCAACGAGCAGGCGACGTTCGTGCTGACCAGAGCTGCACTGAGTCACATCTACAGCTGTGTCCAGCAGCACACGGCAGAGCAGGGTCCCTTGGCCAACCTCCCTGGCATGGACAGCACATCCTTAAAAACAGCAATGGTTCAGTTTGACCGTTATTTGGCATCTCCTGATACACTTGTGATGCCGCAACTCAACTTCCTGCTCAGTGCTGCTATCAAGGAGCAGATCTTCAAACAGTCCACAGAGCTGGTGTGTCGTGCGTATGGAGAGGTGTATAAAGCTGTCACCAACCCTACAAACGCCTATAAAGACGCTGAGTCTGTCCTGCACAGATCTCCACAGCAGCGGCCCAATGGCCAGTCACGCCATCCTTTAATTGCCGACAAAACGCCTGCCAGTGCTCGTTCGCCAACTAAATTTAGCAAAACACTGAAAAACAGCAGAGAAAATAAAAGCAGTATTACTCTCAGACTTTTAATAGAAGTTTGTACTAAATCTGAAATGAAAGCAGATGCAATAGTAAGCCTCGCAGAAGTGCAGGGTAAAGGATAGAAGAGCGTTAGGGTGTGAGGAGACTACAGTGAACTCAGTGTGTGAGAGGCGCTGGGGGCCACATGGCCTCTCATCTGGGGGAATATTTTGAGCATGTCACATGGCCGCATTAAAGGGACTCTCCCCGCGGTGCCTGTAGCCAAGAAGCCCCTCACATGCCTCGCATTCAGCTCGAGGCTTTCAACTAGTGAAAAGCAAAGTCAAGTGAAGTACAAGTGTGACACTGTGGTGTGGTTTACTGTGAAATGGGTTATGAATATAGACAACTATTTTTAACCCAGATCACATCTGTGGGAGGCACGGAAACCCATTTTGGTTATCACACAGCATCTAAACCTCCAGCTGAAATGAAAACGTTTGTGTGCAGTCCAGTGTCAGTATGAGTTGAGCATTTGCTTTTCTACATTCACTGGCTACAAGAAGTGTTCAAACACTGAAATACATTTAAGTTAACTCAAGTTAAAGTATGAATACTGTAAAAGTATCAAGCAAAAAATAAA

Function

symbol description
cog6 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process

KEGG:

id description
K20293 COG6, COD2; conserved oligomeric Golgi complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00579690_00648591.mRNA True 3149 mRNA 0.49 24 579190 648591

Neighbor

gene id symbol gene type direction distance location
CI01000092_00508717_00509840 NA coding downstream 68862 508594 ~ 510328 (-)
CI01000092_00506401_00508318 NA coding downstream 70666 505739 ~ 508524 (-)
CI01000092_00418628_00428488 SLC25A15, SLC25A15A coding downstream 150570 417822 ~ 428620 (-)
CI01000092_00409098_00411916 STOML3A, STOM, STOML3B, STOML3 coding downstream 167274 406264 ~ 411916 (-)
CI01000092_00335844_00338581 NA coding downstream 240609 335326 ~ 338581 (-)
CI01000092_00847979_00851661 LPAR6A, LPAR6 coding upstream 198707 847298 ~ 851661 (-)
CI01000092_01054403_01069241 NA coding upstream 405755 1054346 ~ 1069241 (-)
CI01000092_01086701_01097333 CLRN1 coding upstream 437813 1086404 ~ 1097333 (-)
CI01000092_01099061_01100011 GPR171 coding upstream 449593 1098184 ~ 1100021 (-)
CI01000092_01110360_01113717 NA coding upstream 461688 1110279 ~ 1115228 (-)
G304091 NA non-coding downstream 15299 563555 ~ 563891 (-)
G304086 NA non-coding downstream 15793 557708 ~ 563397 (-)
G304085 NA non-coding downstream 45938 529353 ~ 533252 (-)
G304154 NA non-coding downstream 56818 522065 ~ 522372 (-)
G304152 NA non-coding downstream 58605 519836 ~ 520585 (-)
G304218 NA non-coding upstream 129121 777712 ~ 777947 (-)
G304226 NA non-coding upstream 141215 789806 ~ 790021 (-)
G304260 NA non-coding upstream 237607 886198 ~ 886555 (-)
G304261 NA non-coding upstream 241113 889704 ~ 890059 (-)
G304264 NA non-coding upstream 245151 893742 ~ 894424 (-)
G304368 NA other upstream 406713 1055304 ~ 1055722 (-)
G304369 NA other upstream 409734 1058325 ~ 1058920 (-)
G304459 NA other upstream 583309 1231900 ~ 1232292 (-)
G305772 NA other upstream 2076003 2724594 ~ 2724944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016056 cog6,LOC102796367 coding CM030122.1 CM030122.1 4160355 ~ 4188956 (+)