CI01000092_01086701_01097333 (CLRN1)


Basic Information

Item Value
gene id CI01000092_01086701_01097333
gene name CLRN1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1086404 ~ 1097333 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_01086701_01097333.mRNA
TGAACGCGCTTGGCGTAACACTATCCAGAGAAGACATTGAGATACAACTTTACTCTCTAACATGCGTATTGAGCATTAGATATCACTTTATACCATTCGTGTTTTTAGACTTGAGGGTAAATCGACAACAGCAGCGATGTTTTTATCCCTGTTGGATTACAAAAAGTTTGACGTGTGGATATCCATTGATTACTGAGGCTGTGCTCGTCTCCGCGTTGTCAAACACAATGCCTAGCCGTCAAAAGAAAATTATATTCTCTATTGCGGGCGTGCTTTGCTTTGGTTGTGTTCTGGTCGTGGCGGCTGCGATGGGGACTCAGTTTTGGGTTCAAGCGGTTGTTCTGTGCAAGACTGGCGCACAGATCGTCAACGCATCGGGAGCAGAGCTGGAAAAGTTCATCGGAAGGGCGAACTACGGACTTTTCCACGGGAAGGGGATGAAACAGTGTGGTCTGGGAGACAGACCCTTTTATTTCTCCTTTTTCCCTGACCTGATGGATGTGGTTCCAGCCAGTCTACATGTGAGCGTGATCTTCTTCTGTGCGGTGCTCATCGTCTTCTCCTCTGTGTCCTGTGCGTTCTTCTTCTACAATGCCTTCGGAAGCCCATATGAGACACTGCATGGACCCCAGGGCCTTTACCTCTGGAACATGATAAGCTGTTTCTGTGCCTGCTTGGTTCTCATTCTGTTCTCCTCTGAGGTCAAGCTGCACCACCTGACCGAGATCATCTTCACCTTCAACGAGGGCAGCTTCGTCTACAAGACGCAAAGCGAGAGGTACGACAGATCCTTCTGGCTCATCTTCCTCACCTTCCTCACGCACGGTCTCAACATCTTGCTCATCCGCCTGGCCGGGATCCAGTTTCCCTTTCAGGAGGCCAAAGAGTCCGATGCTAGCACAGGAGCTGCGGATATCATGTACTGACCATGATAACATCATGTTCTACTTCCTCCCCTGCACACTCCTATCCTATCGCAGCGACTAGCAATTCTCAACAGGAGCCTTGAAAAAGCAGCATCCGGTTTGTTTACAGCTGAACAGGCAAGGCACATTTGAGCCTCTTAAGCTGTTCAGACCATGTGTGGCGGTGAACTTGGAGATGCTCGTGTGTCTGGGAGAGAAGGGTTCTTATCTCGCAGTGGGGAGGCGGGAGCGAGGAACTCTCTCTTTCAAACAGTCCGCTGATGGAGCATTCATTCTGTCAATCACTGAAACAATTAA
>TU345834
CGGACTTTTCCACGGGAAGGGGATGAAACAGTGTGGTCTGGGAGACAGACCCTTTTATTTCTCCTGTTTCTGTGCCTGCTTGGTTCTCATTCTGTTCTCCTCTGAGGTCAAGCTGCACCACCTGACCGAGATCATCTTCACCTTCAACGAGGGCAGCTTCGTCTACAAGACGCAAAGCGAGAGGTACGACAGATCCTTCTGGCTCATCTTCCTCACCTTCCTCACGCACGGTCTCAACATCTTGCTCATCCGCCTGGCCGGGATCCAGTTTCCCTTTCAGGAGGCCAAAGAGTCCGATGCTAGCACAGGAGCTGCGGATATCATGTACTGACCATGATAACATCATGTTCTACTTCCTCCCCTGCACACT

Function

symbol description
clrn1 Acts upstream of or within several processes, including plasma membrane bounded cell projection organization; sensory perception of sound; and synaptic vesicle recycling via endosome. Located in ciliary transition zone and stereocilium bundle. Is expressed in auditory epithelial support cell; brain; receptor cell (sensu Animalia); and sensory system. Used to study Usher syndrome. Human ortholog(s) of this gene implicated in Usher syndrome type 3A and retinitis pigmentosa 61. Orthologous to human CLRN1 (clarin 1).

GO:

id name namespace
GO:0035869 ciliary transition zone cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_01086701_01097333.mRNA False 1223 mRNA 0.49 3 1086404 1097333
TU345834 True 370 TUCP 0.52 2 1086662 1096918

Neighbor

gene id symbol gene type direction distance location
CI01000092_01054403_01069241 NA coding downstream 17163 1054346 ~ 1069241 (-)
CI01000092_00847979_00851661 LPAR6A, LPAR6 coding downstream 234743 847298 ~ 851661 (-)
CI01000092_00579690_00648591 COG6 coding downstream 437813 579190 ~ 648591 (-)
CI01000092_00508717_00509840 NA coding downstream 576076 508594 ~ 510328 (-)
CI01000092_00506401_00508318 NA coding downstream 577880 505739 ~ 508524 (-)
CI01000092_01099061_01100011 GPR171 coding upstream 851 1098184 ~ 1100021 (-)
CI01000092_01110360_01113717 NA coding upstream 12946 1110279 ~ 1115228 (-)
CI01000092_01122961_01135673 NA coding upstream 25489 1122822 ~ 1136003 (-)
CI01000092_01186569_01191243 NA coding upstream 88788 1186121 ~ 1191533 (-)
CI01000092_01201434_01205306 NA coding upstream 102541 1199874 ~ 1206532 (-)
G304365 NA non-coding downstream 1010 1084513 ~ 1085394 (-)
G304380 NA non-coding downstream 9875 1076298 ~ 1076529 (-)
G304378 NA non-coding downstream 14407 1071410 ~ 1071997 (-)
G304372 NA non-coding downstream 25076 1060641 ~ 1061328 (-)
G304371 NA non-coding downstream 25795 1059859 ~ 1060609 (-)
G304432 NA non-coding upstream 119664 1216997 ~ 1217247 (-)
G304433 NA non-coding upstream 120521 1217854 ~ 1218144 (-)
G304436 NA non-coding upstream 124533 1221866 ~ 1222070 (-)
G304423 NA non-coding upstream 127741 1225074 ~ 1225310 (-)
G304458 NA non-coding upstream 133781 1231114 ~ 1231434 (-)
G304369 NA other downstream 27484 1058325 ~ 1058920 (-)
G304368 NA other downstream 30682 1055304 ~ 1055722 (-)
G304459 NA other upstream 134567 1231900 ~ 1232292 (-)
G305772 NA other upstream 1627261 2724594 ~ 2724944 (-)
G306014 NA other upstream 2580541 3677874 ~ 3679488 (-)
G306679 NA other upstream 3399081 4496414 ~ 4505953 (-)
G306792 NA other upstream 3707062 4804395 ~ 4865973 (-)

Expression


Co-expression Network