CI01000092_01451469_01485752 (ATP1B3B)


Basic Information

Item Value
gene id CI01000092_01451469_01485752
gene name ATP1B3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1451469 ~ 1485752 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_01451469_01485752.mRNA
ATGGCCAACAAAGAGGAGAAAGCTGACGAGAAACAGTCGAGTTGGAAAGATTTTATCTACAACCCACGGACGGGGGAATTCATCGGGCGCACCGCAAGCAGTTGGGCTCTTATATTCCTCTTTTACCTGGTCTTCTATGGATTCCTGGCTGGAATGTTCAGTCTCACCATGTGGGTGATGCTACAGACTCTGGATGATCACACTCCCAGATACAGGGACCGAGTGGCCAATCCAGGGCTGATGATCAGGCCGAAGTACTTGGACATTGGATTTAACCGATCCATTCCCCAGCAATACAACAAGTATGTGCAGCACCTGGAGTCGTTCCTGCAGCAGTACAATGACTCCCTGCAGGACTCAAACAAGCTCTGTGTTGAGGGGGAGTACTTTGAGCAAGATAAAGCTGAGGAGAAGGAGGTGTGCCAGTTCAAGAGAAGTGTGCTACGACAGTGCTCTGGACTGGCTGATAGCACTTTTGGTTATTCAGAGGGCCAGCCATGCATCCTAGTCAAGATGAATCGAGTTATTGGACTTAGGCCACGAGGAGACCCACATATCAACTGTGTAGCTAAGAGAGAAACTCCCCTGCAGATGCAGTATTTCCCCACTGAGGGCAAACTCGACAAGAGTTACTTTCCCTATTATGGCAAGAAATTGCATGCGAACTACGTCCAGCCCGTTGTAGCCGTGAAGCTGCTGCTGGCTGAGGACGACTACAATTCTGAGCTCGTCATCGAGTGTAAGGTGGAGGGAACGGACCTGCTCAACAACGATGAACGCGACAAGTTCTTGGGCCGTGTCACCTTCCGGGTGAAAGTGTTGAAG

Function

symbol description
atp1b3b Predicted to enable ATPase activator activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in several structures, including musculature system; nervous system; neural tube; otic vesicle; and polster. Orthologous to human ATP1B3 (ATPase Na+/K+ transporting subunit beta 3).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_01451469_01485752.mRNA True 825 mRNA 0.50 7 1451469 1485752

Neighbor

gene id symbol gene type direction distance location
CI01000092_01352766_01386659 ECE2B, ECE2 coding downstream 64810 1352745 ~ 1386659 (-)
CI01000092_01317932_01336911 ANO7 coding downstream 112923 1317774 ~ 1338546 (-)
CI01000092_01307631_01315805 NA coding downstream 135664 1307315 ~ 1315805 (-)
CI01000092_01270604_01273133 NA coding downstream 178336 1269745 ~ 1273133 (-)
CI01000092_01266540_01267541 NA coding downstream 182990 1266358 ~ 1268479 (-)
CI01000092_01488880_01522758 TFDP2 coding upstream 3128 1488880 ~ 1522758 (-)
CI01000092_01562366_01575276 RFFL coding upstream 76296 1562048 ~ 1575276 (-)
CI01000092_01588502_01599337 NA coding upstream 102721 1588473 ~ 1599337 (-)
CI01000092_01802304_01802591 NA coding upstream 315043 1800795 ~ 1804239 (-)
CI01000092_01866991_01869504 LIPT2 coding upstream 381149 1866901 ~ 1869535 (-)
G304487 NA non-coding downstream 27678 1423589 ~ 1423791 (-)
G304455 NA non-coding downstream 104581 1346329 ~ 1346888 (-)
G304484 NA non-coding downstream 105856 1345293 ~ 1345613 (-)
G304481 NA non-coding downstream 161692 1289439 ~ 1289777 (-)
G304477 NA non-coding downstream 164914 1286228 ~ 1286555 (-)
G304512 NA non-coding upstream 62486 1548238 ~ 1548482 (-)
G304518 NA non-coding upstream 69646 1555398 ~ 1555698 (-)
G304520 NA non-coding upstream 125328 1611080 ~ 1611355 (-)
G304524 NA non-coding upstream 143332 1629084 ~ 1629384 (-)
G304544 NA non-coding upstream 210056 1695808 ~ 1696381 (-)
G304459 NA other downstream 219177 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 354551 1086404 ~ 1097333 (-)
G304369 NA other downstream 392549 1058325 ~ 1058920 (-)
G304368 NA other downstream 395747 1055304 ~ 1055722 (-)
G305772 NA other upstream 1238842 2724594 ~ 2724944 (-)
G306014 NA other upstream 2192122 3677874 ~ 3679488 (-)
G306679 NA other upstream 3010662 4496414 ~ 4505953 (-)
G306792 NA other upstream 3318643 4804395 ~ 4865973 (-)
G306902 NA other upstream 3667916 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008972 atp1b3b coding NC_007126.7 CM002899.2 4353161 ~ 4415917 (-)