CI01000092_02602158_02608405


Basic Information

Item Value
gene id CI01000092_02602158_02608405
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2601686 ~ 2608405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_02602158_02608405.mRNA
GCCGTCAGTGGTCCCCTCATCTGAAGATGCATTGACGTCTCTTAAGACGACGACCGGTGAGCTTGCATACCAAGTGGTGGAACTGCAGCAGCGACTTCAGATAAAGGAAGTGACACTGGATGAACAACATACCAAGGTGCTTCAGGAACGCGTGGCTGAGGTGCAGACTGGGAACCAACTCCTGAAACAAAAGTATGATTCTCTGCTGGAGCAGCACAAGAACATGGAGAGGACGTACCGACAAGAGAAACTGCACAGCTCCGAGATCCTGGAGAACATGATCCAACTAAAACAGCAGGCAGCTGCCCGCATGAACCATCGTAATGAGAAGAGAGTGAGAGCCAGAGCGGCCAGCCTTCACAAAGAGCTTCAGATGGCTGCCAGTAAGAATGTGGATATTAGCGAAGAGTCTGGAAATGTGTCACCCTCCAAACCATCATCCCCCAAATGTGAAACTGCAGAGAGAGTCGAGAGATCCCATGGGCCACTTTTCAGATCTGCTTCAGCTACGTCCCCCCGCATCATCAGCTCCATCAGAGGACTCTTTGAGAGGAAGATTAGAGGTAAATCAGTGTGCAGGTCAGAAGAAGATCTCTTTATACCATTAGGAGTCTGTCTGGTTGCCAGAGTCCCAACCAAGGCAATTTTTACACTGGTGCGTGTTACTGTTTACAACACGATCAACAACAAATCATATTTTGTGATGTTATATTATAGAAACCTATATAACTTTGTTAAAATGATGAGGAAACAGTTGTGCAGATGGACTAGTAAATGGAGTGATAGGCTAAATGGACAACAATATTTATCTTGTGGTTCTTAAAGGGATAATATCTTAATGATATTTTACAAGCACATCCACTATGGTGGTGGCTGGTGGTCTGTGGATGATGTGGCTGTGGAACAAAGCGTCTGTGTGTCGCTGAGAAACAGTGTCTTTCTGTAGCACACTGCAGCTCTGTCATGTGCAGCCACCCATTTTCATTTGAATAGCTGACAGCAGGAAACTATTTGACAGCAGGTCCTATTTGTGGTATGGAGAGGAGTTGCCACTTCCTTAAATGGACATGTGCCACAATTACTGATTTGCATTTCCTGTTGATCTTTTAAATGCTGTCACGTCAAGATTTAAATACTACTTCCGGTCATTTCATAATTTTTGTTTCAAGAAAAATCTTCATATTGCTGTATTTTTGATGTTAAAATATTGCAGTGCTTATCGCACGCAGCTTTCGTTTCCCCTTGAGTGTAAAGTAATACATTGCTTGTTTTTATAATTTTCACACCTTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_02602158_02608405.mRNA True 1295 mRNA 0.43 7 2601686 2608405

Neighbor

gene id symbol gene type direction distance location
CI01000092_02570666_02599836 NA coding downstream 1850 2570196 ~ 2599836 (-)
CI01000092_02522204_02531634 ARRB1 coding downstream 70052 2522123 ~ 2531634 (-)
CI01000092_02463561_02465847 NA coding downstream 135437 2463123 ~ 2466249 (-)
CI01000092_02423345_02438711 NA coding downstream 162966 2422989 ~ 2438720 (-)
CI01000092_02408861_02410832 NA coding downstream 190200 2408581 ~ 2411486 (-)
CI01000092_02616905_02658519 WDR62 coding upstream 8413 2616818 ~ 2658874 (-)
CI01000092_02673622_02702051 URB1 coding upstream 65119 2673524 ~ 2702051 (-)
CI01000092_02750776_02767145 NA coding upstream 142335 2750740 ~ 2770053 (-)
CI01000092_02771083_02773297 NA coding upstream 162647 2771052 ~ 2777076 (-)
CI01000092_02839795_02842383 NA coding upstream 231354 2839759 ~ 2842409 (-)
G305737 NA non-coding downstream 112074 2489255 ~ 2489612 (-)
G305736 NA non-coding downstream 121521 2479939 ~ 2480165 (-)
G305069 NA non-coding downstream 123142 2478344 ~ 2478544 (-)
G305068 NA non-coding downstream 123749 2477644 ~ 2477937 (-)
G305056 NA non-coding downstream 152915 2447937 ~ 2448771 (-)
G305767 NA non-coding upstream 109597 2718002 ~ 2718204 (-)
G305768 NA non-coding upstream 110470 2718875 ~ 2719151 (-)
G305773 NA non-coding upstream 119032 2727437 ~ 2727705 (-)
G305775 NA non-coding upstream 124228 2732633 ~ 2732835 (-)
G305776 NA non-coding upstream 125136 2733541 ~ 2733796 (-)
G304459 NA other downstream 1369394 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 1504768 1086404 ~ 1097333 (-)
G304369 NA other downstream 1542766 1058325 ~ 1058920 (-)
G304368 NA other downstream 1545964 1055304 ~ 1055722 (-)
G305772 NA other upstream 116189 2724594 ~ 2724944 (-)
G306014 NA other upstream 1069469 3677874 ~ 3679488 (-)
G306679 NA other upstream 1888009 4496414 ~ 4505953 (-)
G306792 NA other upstream 2195990 4804395 ~ 4865973 (-)
G306902 NA other upstream 2545263 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009000 atg16l2 coding NC_007126.7 CM002899.2 5542068 ~ 5563551 (-)