CI01000092_02878710_02896014 (HNRNPL2, HNRNPL)


Basic Information

Item Value
gene id CI01000092_02878710_02896014
gene name HNRNPL2, HNRNPL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2878362 ~ 2896494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_02878710_02896014.mRNA
AATTTTGGTTTTTATGTCGACATCTCAGTGTCTTTAATCTTTCAAACGAGCAGACAGTTTCCAAATAAAAAGTAGGCTACTGGTTCTATTTATTATCTTTATTTGATTTTTTTATTTATATTTATATAATACTGCTATATGTGTGGTGTGAAATAAATAAGCGCTGGATTTTTTTCGTTAAAAAAATGGTCGTGATCTCAAATTATCGAGAAATATTATAAAACACTGCCTTTTATTTTAGGGCTTCCGTATCAACTCGCTGATAGAAGCTGAACGCTGTTCAGAGTGAATGCTGTAGTGCCCAATCATGGAGCTCAGCGAAGCTGTACACTATTTTCATTGGATTACAGTGGTGATTGACAGTTCCGGTTCACCAGTAATATTCACGGTTCTTGTCCGGAGGGCGTCACCCCCGCCTGTCCCATTTTCTGTAGTTTTCGTCCATTTCATTTTGTTGCGCGTGAATCGTAACGGGACAACATGGCGACGCAGACGGCCCGCTACTACAGTGAAGGCGGCAGAGCAACAAAACGACAAAAGACGGAAAGCGAGGGAGGAATGGCGACCGAAGGCTATGATGACCCACACAAGACCCTCCCCTCTCTCGTGGTGCATGTGCGAGGTTTAGTGGATGGGGTTTTGGAGGCAGACATCGTCGAAGCCCTGCAAGAGTTTGGAACCATCAGTTATGTTGTGCTCATGCCCAAGAAGCGTCAAGCCTTGGTTGAATATGAGGATATGAATGGGTCTTGCAATGCTGTTACTTATGCCAACGACAACCAGATCTACATCGCCGGACATCCTGCATTCGTAAACTACTCTACCAGTCAGAAGATATCCAGGCCTGGTGACCCTGATGACTCCCGCAGTGTTAATAATGTTTTGCTTTTCACAATCATGAACCCCATTTATCCCATTACCACGGATGTTTTGTATACTATTTGCAACAACTGTGGTCCTGTTCAAAGAATCGTCATCTTCAGGAAGAATGGTGTCCAGGCCATGAGCGCCCAAAGGGCCAAGGCCTCGCTCAATGGGGCTGATATATACTCTGGCTGTTGCACACTAAAGATCGAGTATGCCAAGAGGTATAGATATTTTACAATGAGCATTCTACTGGTATCAGGGTCGGTATCGGCCAATATTCAGTATTTTGGGTATCTGAATCGGATAGGTTTTGGAAAAAATGGTGCAGATGCTGATGGCAATGGGGGCAATCAAGGTGGTTATCACGGATACCAAGAAGAGAGCTATGGTGGACCCTATGAAGGCCGACGGATGGGGCCACCCATGGGTGGTCCAAGGCGCGGTGGAACCAGTCAGCGTTACGGTGGACAATACGGTCCCCCACCTCCGCCCCCAGGTGAATATGGCGCACATGCAGACTCACCGGTGATCATGGTCTACGGCCTGGATCCAGTTAAAATAAACGCGGACAGGGTCTTCAACATCTTCTGCCTGTATGGCAATGTGGAACGGGTGAAATTCATGAAGAGCAAGCCTGGAGCTGCCATGGTGGAGATGGGAGACTGCTATGCAGTGGATCGTGCCATCTCACATCTCAACAACAACTTCCTGTTCAATCAGAAGCTCAACGTATGTGTGTCTAAGCAGCAGGCCATCATGCCCGGCCAGTCATATGAGCTAGAGGACGGGACCAGCAGCTTCAAAGACTTTCATGGCAGCAGAAATAACCGCTTCACTTCTCCAGAGCAGGCGGCAAAGAACCGCATTCAGCACCCCAGCAACGTCCTCCACTTTTTCAACGCAGCACCTGAGGCTTCACCAGAGTCCTTCACCAGGATCTGTGAAGAACTGGGTGTAAAGAGTCCTTCCAATGTCAAACTTTTCGCAGCCAAAGGTTCCACATCAGAGAGGAGTTCGTCAGGGCTTCTGGAGTGGGAGTCTGTTAATGATGCTATGGAAGCCCTTGCTATGATGAACCATCACCAGATGAAGAACCCCAGTGGGCCGTACCCGTATACACTGAAGCTGTGCTTCTCGACTGCGCAGCATGCAAACTGAGCAGCAGCAGCGTCGCTCTCCCATCACTTCACCTTCCTGCTACTTTATTGTCCTTTACGGCTCATTTGTGCGAGTGGGTGTGCAGAAGTGTTGAGTTAACCTTATGTTGATTGAGCCGCAGCACAAGCTGAGAGTGAAACTGACTGAACTCATTGTTTTTAATGGAAGAGGAGAGTTAAAACGCTTTTGTACCAGTATTTTGGTTTTGTTACCGTTTTTGTTCTTTTTTTTTTTATTGCTTACTATGATCGACTGTTAGCTCTGTGCTCAGCACCTCACTTTTAGAAATGTAACCCTGTAAAGAAGATTGCATTTTTTTTTTTTTTTTTTTTCTGATTGTAAAATAAA

Function

symbol description
hnrnpl Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system and neural keel. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and systemic scleroderma. Orthologous to human HNRNPL (heterogeneous nuclear ribonucleoprotein L).
hnrnpl2 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and systemic scleroderma. Orthologous to human HNRNPL (heterogeneous nuclear ribonucleoprotein L).

GO:

id name namespace
GO:0006397 mRNA processing biological_process

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_02878710_02896014.mRNA True 2373 mRNA 0.46 13 2878362 2896494

Neighbor

gene id symbol gene type direction distance location
CI01000092_02868492_02873015 NA coding downstream 5347 2868473 ~ 2873015 (-)
CI01000092_02851435_02865690 PHKG1B, PHKG1, PHKG1A coding downstream 12672 2850442 ~ 2865690 (-)
CI01000092_02839795_02842383 NA coding downstream 35953 2839759 ~ 2842409 (-)
CI01000092_02771083_02773297 NA coding downstream 101286 2771052 ~ 2777076 (-)
CI01000092_02750776_02767145 NA coding downstream 108309 2750740 ~ 2770053 (-)
CI01000092_02902889_02909457 RET2, RBP2, RBP2A coding upstream 6318 2902812 ~ 2909489 (-)
CI01000092_02933754_02957495 BRWD1 coding upstream 37260 2933754 ~ 2957674 (-)
CI01000092_03086245_03088783 NA coding upstream 189714 3086208 ~ 3089118 (-)
CI01000092_03103762_03184280 DSCAMB, DSCAM coding upstream 206611 3103105 ~ 3184280 (-)
CI01000092_03224848_03225687 NA coding upstream 327967 3224461 ~ 3225795 (-)
G305844 NA non-coding downstream 53489 2824605 ~ 2824873 (-)
G305842 NA non-coding downstream 56617 2821454 ~ 2821745 (-)
G305838 NA non-coding downstream 65303 2812800 ~ 2813059 (-)
G305836 NA non-coding downstream 75605 2800630 ~ 2802757 (-)
G305835 NA non-coding downstream 81407 2796686 ~ 2796955 (-)
G305822 NA non-coding upstream 71081 2967575 ~ 2969733 (-)
G305874 NA non-coding upstream 75265 2971759 ~ 2971999 (-)
G305819 NA non-coding upstream 76538 2973032 ~ 2977423 (-)
G305893 NA non-coding upstream 144358 3040852 ~ 3041060 (-)
G305772 NA other downstream 153418 2724594 ~ 2724944 (-)
G304459 NA other downstream 1646070 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 1781444 1086404 ~ 1097333 (-)
G304369 NA other downstream 1819442 1058325 ~ 1058920 (-)
G304368 NA other downstream 1822640 1055304 ~ 1055722 (-)
G306014 NA other upstream 781380 3677874 ~ 3679488 (-)
G306679 NA other upstream 1599920 4496414 ~ 4505953 (-)
G306792 NA other upstream 1907901 4804395 ~ 4865973 (-)
G306902 NA other upstream 2257174 5153668 ~ 5154133 (-)

Expression


Co-expression Network