CI01000092_02933754_02957495 (BRWD1)


Basic Information

Item Value
gene id CI01000092_02933754_02957495
gene name BRWD1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2933754 ~ 2957674 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_02933754_02957495.mRNA
AGCTAGTTTCTGTTCCGATAGAACATTAATGCTTGCTTCAGTGTTTCCTAGACCCGGTTTTTACACTTTACTTACCAGTGCGTAAGCTATTTTAATTTATTTCCTTTTTTTTGTTCTAAAAGCATACAAGCTTTAAGCAGCCATGCCGAAAAGGAGCAAAGCTAACAATGACACTGAAGCAGCTGGGAAACCCCAAACGCCAAAGTCTGAGCCCAAGCCAAAGAAGGCACCTGCAAGGGGAAAGAAGGCCAAGGAGGTAGAAAAGGCCAAACCCGAGGAGAAGAAAGAGGATGCGAAGCCCGAGGCTGAGTCTGAGGAGAAAACTCCAGCGGAGAACGGAGAGACCAAAGCTGATGAAGCGGAAGTAGCTATGAGCTCAGGCCTCATACTTCCAATGGCGACCGAAAACTGGCCGAACAGAAAGCGGGAGCAATCGTGGAGGGAGTTGTATTACTTGATATCGCGCTATTTGAGCACGGGGCCGTGTCGGAAAGCGGCCGAGGCTCTTGTGTGCGAGCTGGAGGAAAATCAGCTCCTTCCACGTCGATTGGATTGGGAAGGAAATGAACACCCGCGATCTTATGAAGATTTGGTTGCTGCCAACAGACACATCGCACCAGACCACCTTTTGCAGATATGCAAGCAGATTGGTCCAGTTCTGGACCGAGAGGTTCCGTCTGGTGTGCCAGGAGTGCACTCTCTACTGGGGGCTGGGAAACACTCTTTACTGCGAAGATCAAAAGACTGCGGCAGTAGCAGATGGAAAGCCTCCACGTTCGCGGCCCTTCATAGAGGGAGACCACCAGAGAGGCCTTTAAGCTGCAGGGATGCCAATATAGTGGAGGTGTGTCGAGGCAGAGTGCTCACAGGAGCTCAGCGCTTCAGCACTATCAACCCTGTCAGCAATTATCAGCACATGAGGATGCACAGGAGGATCCTGGGACATCTCTCTGCTGTGTACTGTATCGCCTTTGATCGAACAGGTTCCAGGATTTTTACGGGTTCCGACGATGCCTTGGTGAAGATCTGGTCCTCCTTTGACGGAAGGCTTCACTCCACTCTCAGAGGACATTATGCTGAGATATCAGACCTCGCCGTTAACTTTGAGAATACCCTTATTGCGGCCGGGAGCTGCGACAAAAGCATTCGAGTCTGGTGCCTTCGTACTTGCGCCCCAGTGGCGGTCCTGCAGGGCCACAGTGGATCTATTACCTCTTTACAGTTCTCTCCATTTGTCAAGGGCTCCAAAAGGTACATGGTGTCCACAGGAACTGATGCAACAGTGTGTTTCTGGCAGTGGGATGTGAATAATAACTGTTTCAGTGATCGTCCACACAAATTCACAGAGAGGCCGAGGCCTGGTGTTCAGACAGTCTGCTCTTCCTTCAGCCCTGGTGGCATGTTCCTTGCAACAGGAAGCACAGATGATGTCATCAGGATATATTACCTGGGCAGTGGCTGTCCAGAAAAACTAGCTGAGCTTGACTCTCACACAGACAAGGTGGACAGCATCCAGTTCTGTCATTCAGGAGAGAGGTTTGTGAGTGGCAGTCGAGACGGCACTGCTCGTATATGGCGACTGCATCAGAAACATCAATGGAAGAGCATTTTATTGGACATGTCTGCCACTCTTCCAGGGTCTGCACCTTTAACAGAGGACGAAAATTTCTTCAAACCCAAAGTCACCATGGTGTCCTGGGACCGCCATGACAACACAGTCATTACCGCCGTCAACAATTATCTTCTCAAAGTGTGGAATTCCTATACTGGACAGTTGCTTCATATCCTTAAAGGTCACGAGGCAGAGGTGTATGTTTTGGAGCCACATCCCTATGACCCTCGTGTCATGCTGTCTGCGGGCCATGATGGGAATGTCTTCATATGGGACCTCACCAGAGGCATTAAAACCATGCATTACTTTAATATGATTGAAGGTCAAGGACATGGTGCTGTATTTGACTGTAAGTTCACCCCTGATGGCCATCGCTTTGCAATGACAGACTCTCATGGACATCTGGTTATTTTCGGGTTTGGGAGCTCCAAGCCTTATGAGAAGCTTCCAGACCAGGTGTTTTTCCACACTGACTATCGGCCACTGATCCGGGACTCAAATGGGTTTGTTCTGGATGAGCAGACCCAGCAGGCCCCACACCTGATGCCTTCTCCCTTCCTGGTGGATGTGGATGGGAACCCTCACCCTCCCAGATTCCAAAGACTGGTCCCAGGAAGAGAAAACATTGCAGATGAGCATTTAGTTCCTCAACTGGGTTATGTCGCTACAAGTGATGGTGAGGTCGTGGAGCAGGTGATCAGTCAGCAGTCTGCAGAGAGTGAGGAGGTTCGTCACAGCGCCCTGGATTTTGCCATCCGCCAACTTCAACAGCATCATGACAGACAGGTTGTAGCTCAGGGAGAGGGTGGCATTCCTGCTGCTGCCCGTGTGCCAGACCCTGGAACTCCCCGCAGAGTGTCGCTGAACGAGCGCATGGATGTGCAGTCTCCACCTAACGTGGGTTTACGGCGCAGTGGACAGGTAGAGGGAGTTCGGCAGATGCACCAGAATGCTCCACGCAGTCAGATGGCAACAGAGAGGGACCTTCAGGCCTGGAGACGCAGGGTGGTGGTACCTGAGCTTACGGCAAGTGGCTACAGGGCGCAGGAGTCATTCAGAACATCCAAGGGCGATGAGGAGGTCAGCCTTTACAACATCAAGAGAAGAAGAGTAACCCACGCCAGCTTCAGGGATGATTCTGATGAAGAGGGGCCGTGCCTCAAACGTGCGCAGTCACGCAAACGGCAGAAAAACCAGCAACGTAAAGAGAGTCTGGCTGAAGAGTACATAGAGTTCTCATGTGAGGAAGGAGAGGAGACGGCATCTTCCGAGGATAGTGAAATGGAGGGCAGTGATGTTGATTTGTCCATTGAGGATGAAGAGGAATGGAGGAGTGATAGCTCAAGGATCAGCAGCTCTGAGGAAGAGGATGAGGAGGATGAAGATGTAGCGGATGAGGAGCAAACTCTAGATGAAGAGGAGCAGATGTCTTCACCCAGAAAGCACAAGAAGGCCAAAAGCAAAATGCCAAAGCCACCAAAACCGAGGCCTCCCATTAACAGAGAGATCTCAAATGAGTTCCGTCCCCCAGCTTGGATTACTGACGTCATTCCCCGAAAGTCCCCCTTCGTCCCTCAAATGGGAGATGAGGTCATCTATTTTCGTCAGGGTCATGAGGCGTATGTGGATGCAGTCTGTAGGACAAACCTGTACCCCATTAACCCAGACAGACAGCCATGGAAGAAGATGGAGTTAAGA

Function

symbol description
brwd1 Predicted to be involved in cytoskeleton organization; regulation of cell shape; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human BRWD1 (bromodomain and WD repeat domain containing 1).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K11798 BRWD1_3; bromodomain and WD repeat domain containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_02933754_02957495.mRNA False 3310 mRNA 0.51 29 2933754 2957637

Neighbor

gene id symbol gene type direction distance location
CI01000092_02902889_02909457 RET2, RBP2, RBP2A coding downstream 24265 2902812 ~ 2909489 (-)
CI01000092_02878710_02896014 HNRNPL2, HNRNPL coding downstream 37260 2878362 ~ 2896494 (-)
CI01000092_02868492_02873015 NA coding downstream 60739 2868473 ~ 2873015 (-)
CI01000092_02851435_02865690 PHKG1B, PHKG1, PHKG1A coding downstream 68064 2850442 ~ 2865690 (-)
CI01000092_02839795_02842383 NA coding downstream 91345 2839759 ~ 2842409 (-)
CI01000092_03086245_03088783 NA coding upstream 128571 3086208 ~ 3089118 (-)
CI01000092_03103762_03184280 DSCAMB, DSCAM coding upstream 145468 3103105 ~ 3184280 (-)
CI01000092_03224848_03225687 NA coding upstream 266824 3224461 ~ 3225795 (-)
CI01000092_03271224_03274775 DSCAM coding upstream 313587 3271224 ~ 3275286 (-)
CI01000092_03307794_03308422 NA coding upstream 349565 3307202 ~ 3308514 (-)
G305844 NA non-coding downstream 108881 2824605 ~ 2824873 (-)
G305842 NA non-coding downstream 112009 2821454 ~ 2821745 (-)
G305838 NA non-coding downstream 120695 2812800 ~ 2813059 (-)
G305836 NA non-coding downstream 130997 2800630 ~ 2802757 (-)
G305835 NA non-coding downstream 136799 2796686 ~ 2796955 (-)
G305822 NA non-coding upstream 9938 2967575 ~ 2969733 (-)
G305874 NA non-coding upstream 14122 2971759 ~ 2971999 (-)
G305819 NA non-coding upstream 15395 2973032 ~ 2977423 (-)
G305893 NA non-coding upstream 83215 3040852 ~ 3041060 (-)
G305894 NA non-coding upstream 83431 3041068 ~ 3041294 (-)
G305772 NA other downstream 208810 2724594 ~ 2724944 (-)
G304459 NA other downstream 1701462 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 1836836 1086404 ~ 1097333 (-)
G304369 NA other downstream 1874834 1058325 ~ 1058920 (-)
G304368 NA other downstream 1878032 1055304 ~ 1055722 (-)
G306014 NA other upstream 720237 3677874 ~ 3679488 (-)
G306679 NA other upstream 1538777 4496414 ~ 4505953 (-)
G306792 NA other upstream 1846758 4804395 ~ 4865973 (-)
G306902 NA other upstream 2196031 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location