CI01000092_03103762_03184280 (DSCAMB, DSCAM)


Basic Information

Item Value
gene id CI01000092_03103762_03184280
gene name DSCAMB, DSCAM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3103105 ~ 3184280 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03103762_03184280.mRNA
GATCAAGATATCTTATTACATCCACGGGGGCCTTGTATATTCTGGATGTGCAGTCAGAGGACGCGGTGAATATTTATCGCTGTACCACGCGGCACCGATACACAGGGGAGACCAGACAGAGCAACAGTGCCCGACTGCTTTTATCAGAACCTGTGGACTCCGCTCCGGTGATTCTGGATGGGTTTGAACGGAGGGAGGTTATGGTGGGACACCGGGTGGAGCTCCCGTGTAAAGCGTCCGGTCACCCCCCACCCAGGTATCGTTGGCTGAGGGACAACAGCCCCTTAGAATCAGACAGCCGCTACCACCAGAGTGTATCGGGCCTTCTCATCGAGGCCACACGACCCAGTGACGCAGGCAGTTATGTGTGTGAGGTGTGGAACAGCTTCGGGAACGCCAAAGTGGTCGGACGGCTGGTGGTCAAACAGCCTCTGAAAGCAGTGGTGAGCCCACGGAAGGTGAGAGGCAGCGTGGGTAGCCAAGTGTCTCTGTTCTGCAGTGTGACTGGTTCTGACGAGTATGACATCACCTGGTACAGGAACGGTGAGAAGATCTATCAGGGTATAAACGTACGTATCACGGGCATCAACAACGAGAACCTGGTGATGGAGGGAATGGCCAAGAGTGATGGAGGAGCGTATCAGTGCTTTGCTCGAAATGGCAAGATGTCCACCCAAGACTTAGTTCAGGTCGTCTTGGAAGACGGGACGCCAAAGATCCTCTCTGCCTTCAGCGAGAAGGTGGTGAGCCCGAATGAGCCCATCTCCCTTGTGTGTCACGTGAAAGGAACGCCCCTCCCCACCGTCACCTGGACCCTGGACGACGACCCCGTCATCAAAGACAGCAACCACCGCATGGATCGCATCATCACCACGGAAGGCCACGTGCTCAGCTACCTGAATGTGTCTCACACACAGGTCAGCGATGGGGGCGTCTACCGCTGCACCTGCAACAACTCGGCCGGATCGGTCTCCTACCAGGCTCGAATAAACTTCTTTCTCACAACAGGCCCTGCCAGTATTCGACCAATGAAAAATGTCACTGCCATCGCTGGGAGGGACACGTACATTCACTGTCGCATCATTGGTTACCCTTACTACTCTATTAAGTGGTACAAGGATTCCAAACTGCTCCCGTTCAACCATCGCCAACGTGCCTTTGAGAACAACGGCACACTGAAGCTGTCCAATGTGCAAAACTCGGACGAGGGAGAGTACACATGCTACGTGTTGGTGGATCCAGAGAAACAAATTCACAGGAGTGTTCATGTGACAGTGAAAGGTACTACTGTGCAGACAGAAAGCGCTTCCATCGGTCAGCGTGTCTTCATCCCCTGTGTGGTCATATCCGGCGACCTGCCCATGTCTATAACCTGGCACAAAGATGGACGACCAATTAATGCCAGCCTGGGTGTCACCATCGACAATATAGACTTTACCAGCTCATTACGCATTTCAAACCTGTCGGAAATTCATAACGGCAGTTACACCTGCATTGCCCGTAACGAGGCTGCAGCCGTTGAGCACAGTATACAGCTCATCGTTAAAGTTCCACCACATTTTGAGGTACAGCCAAGAGACCAGGACGGCATATATGGGAAATCGGTGATCCTGAATTGTTCAGCAAAGGGAAACCCAATCCCCACTATAGTATGGAACCACTCCAAAGGTGCTGGCGTACCTCAGTTCCAGCCCATCGCCTTGAATTCTGGCTCACGTATCCAGCTCCTGGAAAAGGGCTCTCTGCTCATAAAACACGTCCTGGAGGAAGATGCTGGATTTTATCTGTGCAAGGTCAGCAATGACGTGGGAGCCGATATCAGCAAGAGCATGTACCTCACCGTTAAAATTCCCGCTATGATCACATCTTACCCCAACACCACACGAGCGGAACAGGGTCACATGACTGAGATGAGCTGCACTGCTCACGGTGAAAAGCCCATCAAGGTTCGCTGGGAGAAGGAATCTCATATCATCAACCCAGACATGAGCCGCTATGTGGTTACTGTGAAGGAAGTGGCCGATGAGGTCATATCCACCCTGCAGATCTTACATACTGTCAGAGAAGATTCTGGCTTTTTCTCCTGCATTGCTATCAACTCTTATGGTGAAGATAAAGGAATCATTCAGCTGATAGTACAAGATCGTCCTGACCCTCCTGAGGTTGAGATCAGAGAGGTCAAGGACCGAACCATCGCACTTCGCTGGACAATGGGCTTTGATGGCAACAGCCCTATTACAGGATATGACATCAACTATAAAAACAAATCTGCTTCATGGGCCTCATCTCAGATGACCAAAGACGTCTCCCCTCAGCTGAATCAGGCCACCATCATTGAACTCCACCCTGCTTCCACCTACAACATCCGCATGTTTGCCAAAAACCAGATCGGAGAAAGCCGACCAAGCAATGAGCTGACCATCACCACAGATGAAGCCCCACCTGATGGCGCTCCTCAAGACGTGCAGCTGGAAGCAATCTCATCCCAAAGCATCAAAGTCACGTGGAAGCCCCCCCTCAAACATTTGCAGAATGGTTTGATCCGAAGCTACCAAGTGTGTTATCGGGAGTTTGGGACAGGGGGCAGCCCCCAGTACAACACCATCAATGTTGACACCACGGGGGACATCGAAACCCTCACTCTGGATAACCTGAAGAAGTACACACAGTATGAGGTGCGGGTGCAAGCGGCCAATCGGGCAGGAATGGGTCCCACCTCAGAGGAAATCACCATCACCACGCTAGAGGATGTGCCCAGTCGCCCACCGGAGAACGTTGTGACCACAGCCACCACCCCCGAGACCATCTCCCTGTCCTGGTCTGCTCTGCCCAAAGAAGCCCTGAACGGCATGCTGCTTGGATATCGTGTCATCTACTGGGCCAATCTACCTGATGGAGAGCTGGGAGAGATCAGGAACATCACAACCACCAAGCCTTCACTAGAGTTGGAACGGCTGGAGAAATACACCAACTACAGTATCCAGGTTCTGGCCTTCACTCGAGCCGGAGATGGAGTCCGTAGCGAGCAGATATACACGCGCACCAAAGAGGACGTTCCTGGCCCTCCGGCTGGAGTTAAGGCAGCTGCTTCCACAAGCTCGGTGGTGTTTGTTTCCTGGCTGCCTCCATTCAAGCTCAACGGAATCATCCGGAAATACACCGTCTTCTGTTCTAACCCTTACCCCACGGTGATCAGTGAGTTTGAGGCTGCTCCTGATGTTTACTTCCGTCGTTTGACCAACCTGAACCAGAACTGGCAGTACAGCATCTGGGTGGTTGCGGTCACTGCGGCAGGTCGTGGGAATGCCAGTGAAATTATCACCGTAGAGCCCCAAGCTAAAGCCCCTGCTCGAATCCTGACGTTCAGTGGCACTGTGACTACCCCTTGGATGAGGGACATTGTCCTTCCATGCAAAGCAGTCGGAGACCCTCCTCCAACCATCAAGTGGCTGAAGGGAAATAATGGTACACCTGCTCCAGTTTCAATCGATGGTCGTCGCAGCGCTCACAGCAATGGCAGCTTTGTTATTCGTACAGTCAAAGCAGAGGATTCTGGGTACTACAGATGTGTTGCCAGCAATAACTGGGGTTCAGATGAGATCATGCTAAATCTTCAGGTCCAAGTACCTCCGGACCAACCACGCCTCACAGTGACCAAAACCACAACCACCTCCATCACACTGTTCTGGATCCCTGGAGACAATGGAGGAAGCTCCATCAGAGGCTACATTCTGCAGTACTCTGAGGATAACAGTGAAGAGTGGGGCAGTTTCTCCATCAGCCCCAGTGAGCGGTCTTACCGTCTGGAGAATCTGAAGTGCGGTACTTGGTACAAATTTACTCTGACTGCACAAAATGCAGTTGGTCCTGGACGCATCAGTGAAATCATTGAGGCTAAAACCCATGGGAAAGAACCACAGTTCGCCAAAGACCATGAGCTTTTCTCAAGTATCAACTCTACCCGTGTGGAGCTCAACCTCATTGGCTGGAACAACGGCGGCTGTCCGATCGACTCCTTCACACTGGAATATCGGCCCGTGGACACTATGAAATGGACCATGGTAAAGCGAGATTCCCTCACCAAGAGCTACACTCTGTACGACCTACAGGAGGCCACCTGGTATGAGCTCCAGATGAGAGTGGGCAACAGTGCAGGAACAGCAGAGAAGAGGGTGCTGTTTGCCACTTTAAACGTGGATGGCAGCACAATTGCTCCATTGCCAAAGACTGTGGACCCCAGCCAAGAGAACAGGCAGGGCAATGAAGGACTAAAGATGATGGTCACAATCATATGCATTCTGGTGGCAATCTCCATGGTCTTCATTGTTCTTCTGGTATTGAGGAGGAGGAGAAGAGAGCAGAGACTCAAGAGATTACGAGATGCAAAGAGCCTAGCAGAGATGCTAATGAGTAAAAATGCACGTACACCAGACACCGTGAACAAACAGCAGCAGACTCTGAGGATGCACATCGATATCCCACGTGCTCAGCTGCTCATTGAGGAGAGAGACACTATGGAGACAATCGATGACCGCTCCACAGTGCTATTGACGGATAATGACTTCGGAGAAACGTCTAAACAGAAGTCCTCTACCGTCACCCATACAGTGCATTACCAGTCTCTATCTCAGGCCACTGGACCACTAGTAGACGTGTCTGACGCTAGACCTGGTACAAACCCCACTGCCCGCCGCACAGCTAAAGCAGGTCCTGCCACACGCAGTCGCTACGCCAGCCAGTGGACCCTGAACCGACCGCACCCTCCCGTCTCCTCACACACTCTGACTACTGACTGGAGACTGCCCACACCCCGCGCCACGGGCTCAGTGGACAAAGAGAGCGACAGCTACAGTGTCAGTCCCTCTCAGGACACAGACCGTGCTCGCAGCAGTATGGTGTCTACAGAAAGCGCCTCCTCCACGTATGAGGAGTTAGCCCGTGCCTACGAACACGCCAAGATGGAGGAACAGCTGCGACACGCTAAGTTCACGATCACAGAGTGCTTCATCTCAGACACATCCTCCGAACAGATGACGGCCGGCACCAATGACTACACAGACAGCCTGACGTCCAGCACGCCATCAGAGTCAGGCATCTGCAGATTTACCGCCTCCCCGCCCAAACCACAAGACGCCAGCCGGGTCATGAATATGGCCGTGCCCAAAGCACACAGACCCGGAGGTGAGCTGGTCCATCTTCCCCCTTACCTACGCATGGACTTCCTTTTGAACCGGGGGGCGGCCCCTTCAGGTCGCGAGGCCACAGGACAGACTTGTATGGACCCACAGAAGAGCCGATTGGCGAAGCGGCCAGCATTGCTGGCCCCCACACCCTCCGAGACCCCCTCGTCAGCCCTCTCTTCCTCCGGCCCCCCCAGCAGAGAGGCAGTACAGCAGTGGCAGCCGGGAACTGCCTCGACACTGCCACAGCGCGAGCCGGGCGACCTGGCCCAGGCCGCCAAACTCAGCAGCTCCCAGGAATCGCTGCTAGACTCCAGAGGACACCTGAAACAAAGCAACAACCCCTACGCAAAGTCCTACACACTTGTATAACACAGGACTACAGCTACGGACCACGTTGCACTGTCACGCACACACACGAACGTGAGGACCTGCTGCAAAGACGAGCGCTTTTCTGATTCAGAGATGAGTCCTGTACATACATTCTGAATTCCTAAAGAAGTGGATAGTTTTCTTTGCATCTGTCTTTCTTTCTGTCTGTCTCACTCTCTCTGCTGTTTTTTTACACTTTCTTTCTTTCGCTCACCTTCTTCTCTTGCCCTTTTTTTTTTTTTTGACTAAGTTGGATTTTTTACGTAATCATTCATTTATTTTAAATACCACCGTTATGGAAGATTGCCAAAATTATTTATTTAAATTGACAGAGGAACTACTTTTGAATTTATATCAAGGATAATTCTATAGTCATTATTATTATTATATAAAAATAGAGAAAAATTATCAAAAAATGGTTTAAAAAGGCGGGGTGTGGTCAGCTCTGCAGGAAGACGTCGCTTTCTTTATCCATGACTCTGTTGTTTTGAGGTGTGATCGGCAATTTCGTAGCTGTTTATCGCGGCGGTGTATCTGACGATCGCAGAAGACATGGAGGAAGGACAACGAGTCCAACTTGGAGGACACTCGTCCACAGTTTCCACTCGTCTCAGAATGTTGTGCTTTCTAAGGACTGCATGGGGACCTGAAAATAAA

Function

symbol description
dscamb Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and nervous system development. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in axon and plasma membrane. Is expressed in ciliary marginal zone; retina; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human DSCAM (DS cell adhesion molecule).
dscam Enables netrin receptor binding activity. Involved in positive regulation of axon extension involved in axon guidance and positive regulation of phosphorylation. Predicted to be located in several cellular components, including dendrite; growth cone; and neuronal cell body. Predicted to be active in axon and plasma membrane.

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K06767 DSCAM; Down syndrome cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03103762_03184280.mRNA True 6209 mRNA 0.52 30 3103105 3184280

Neighbor

gene id symbol gene type direction distance location
CI01000092_03086245_03088783 NA coding downstream 13987 3086208 ~ 3089118 (-)
CI01000092_02933754_02957495 BRWD1 coding downstream 145468 2933754 ~ 2957674 (-)
CI01000092_02902889_02909457 RET2, RBP2, RBP2A coding downstream 193616 2902812 ~ 2909489 (-)
CI01000092_02878710_02896014 HNRNPL2, HNRNPL coding downstream 206611 2878362 ~ 2896494 (-)
CI01000092_02868492_02873015 NA coding downstream 230090 2868473 ~ 2873015 (-)
CI01000092_03224848_03225687 NA coding upstream 40181 3224461 ~ 3225795 (-)
CI01000092_03271224_03274775 DSCAM coding upstream 86944 3271224 ~ 3275286 (-)
CI01000092_03307794_03308422 NA coding upstream 122922 3307202 ~ 3308514 (-)
CI01000092_03365550_03416277 ATM coding upstream 180727 3365007 ~ 3416277 (-)
CI01000092_03418301_03428309 ATM coding upstream 234021 3418301 ~ 3428309 (-)
G305813 NA non-coding downstream 19459 3051910 ~ 3083646 (-)
G305898 NA non-coding downstream 58152 3044742 ~ 3044953 (-)
G305897 NA non-coding downstream 58607 3044240 ~ 3044498 (-)
G305896 NA non-coding downstream 60904 3041986 ~ 3042201 (-)
G305894 NA non-coding downstream 61811 3041068 ~ 3041294 (-)
G305817 NA non-coding upstream 42554 3226834 ~ 3275358 (-)
G305922 NA non-coding upstream 125813 3310093 ~ 3310299 (-)
G305811 NA non-coding upstream 172566 3356846 ~ 3357075 (-)
G305805 NA non-coding upstream 173087 3357367 ~ 3359859 (-)
G305772 NA other downstream 378161 2724594 ~ 2724944 (-)
G304459 NA other downstream 1870813 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2006187 1086404 ~ 1097333 (-)
G304369 NA other downstream 2044185 1058325 ~ 1058920 (-)
G304368 NA other downstream 2047383 1055304 ~ 1055722 (-)
G306014 NA other upstream 493594 3677874 ~ 3679488 (-)
G306679 NA other upstream 1312134 4496414 ~ 4505953 (-)
G306792 NA other upstream 1620115 4804395 ~ 4865973 (-)
G306902 NA other upstream 1969388 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009009 dscamb coding NC_007126.7 CM002899.2 6138423 ~ 6404443 (-)
bowfin (Amia calva) AMCG00004617 NA coding CM030121.1 CM030121.1 54884061 ~ 54894951 (+)