CI01000092_03271224_03274775 (DSCAM)


Basic Information

Item Value
gene id CI01000092_03271224_03274775
gene name DSCAM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3271224 ~ 3275286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03271224_03274775.mRNA
AACCATTTTATCATAATTTTATTAGTATTTAAAAATCTAAAATTGTATAACTTATAATCTTATATACTGTACACTGTAAACCCGGATAAGCTGAATTTACTTAAAAATTTTGAGGAAACTGGTTGCCTTAAAAATGTAAGTATTGTGAACTTAAAAATTTCAGTTCATATAACTTAAAATGTTTTTACTATCAATTAATTTACAGTCATTACACTTAATAGTATATTTAAGTCCAATTTATTAATTTCCAAGTTAAATTTATATTAATTGTTTTATTTTTTTTTTAATTTGTTAAACTAGAAAATGATTTTTTCATGTCCTGAAAACATTTTCCCCATAAAACATGTAAAAAAAAAAATTAGTTTGCTAAGTGCTAACATTGGAAGTTTAAACTTGAAAAGAGCCACTCAGCCATTTTTTCTGCCATTTTTTTTTTTTTTTTACTTGACTTACTTATAGTTGTCTTTACATATTAAACTGTGACAGAATATATTTATAACATTAAAAACAAATGACTGCCATTACAGTCAACATTAATGCGCCTTCATCCGTATTACTGTTCTCACTCACTAACTCCTGTCCTGTCTTTTCCTTGACAGTTTTCGGTGAAGATCTACGTTCCAGCTTATATTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTCTCCAGCACCACAGGGGCACTGGTGCCGTGTCCTGCCGCGGCCGTGCCCCCCGCCACGCTGCGCTGGTACCTCGCCACCGGGGAGGAGATCTACGATGTCCCAGGCATCCGCCATGTGCACCCCAACGGCACGCTGCAGATCTACGGCTTCCTGCCGTCCAGCTTTAGTAACCTAATCAATGACAATACGTACTACTGCACAGCGGAAAACCCATCAGGAAAGATCAGGAGCCAAGATCTACACATTAAGGCCGTATTCCGGGAGCCGTACACAGTGCGTGTGGCCGATCAGAGAGTCATGCGAGGGAATACGGCCGTCTTCAAGTGCATTATCCCGGCCTCAGTAGAGGAGTACGTCAGTGTTGTATCATGGGAGAAAGACACAGTCTCACTTGTCTCAG

Function

symbol description
dscam Enables netrin receptor binding activity. Involved in positive regulation of axon extension involved in axon guidance and positive regulation of phosphorylation. Predicted to be located in several cellular components, including dendrite; growth cone; and neuronal cell body. Predicted to be active in axon and plasma membrane.

GO:

id name namespace
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process

KEGG:

id description
K06767 DSCAM; Down syndrome cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03271224_03274775.mRNA True 1064 mRNA 0.38 2 3271224 3275286

Neighbor

gene id symbol gene type direction distance location
CI01000092_03224848_03225687 NA coding downstream 45429 3224461 ~ 3225795 (-)
CI01000092_03103762_03184280 DSCAMB, DSCAM coding downstream 86944 3103105 ~ 3184280 (-)
CI01000092_03086245_03088783 NA coding downstream 182106 3086208 ~ 3089118 (-)
CI01000092_02933754_02957495 BRWD1 coding downstream 313587 2933754 ~ 2957674 (-)
CI01000092_02902889_02909457 RET2, RBP2, RBP2A coding downstream 361735 2902812 ~ 2909489 (-)
CI01000092_03307794_03308422 NA coding upstream 31916 3307202 ~ 3308514 (-)
CI01000092_03365550_03416277 ATM coding upstream 89721 3365007 ~ 3416277 (-)
CI01000092_03418301_03428309 ATM coding upstream 143015 3418301 ~ 3428309 (-)
CI01000092_03600064_03611514 MEIS3 coding upstream 324628 3599914 ~ 3612148 (-)
CI01000092_03614992_03615400 NA coding upstream 339151 3614437 ~ 3616983 (-)
G305813 NA non-coding downstream 187578 3051910 ~ 3083646 (-)
G305898 NA non-coding downstream 226271 3044742 ~ 3044953 (-)
G305897 NA non-coding downstream 226726 3044240 ~ 3044498 (-)
G305896 NA non-coding downstream 229023 3041986 ~ 3042201 (-)
G305894 NA non-coding downstream 229930 3041068 ~ 3041294 (-)
G305922 NA non-coding upstream 34807 3310093 ~ 3310299 (-)
G305811 NA non-coding upstream 81560 3356846 ~ 3357075 (-)
G305805 NA non-coding upstream 82081 3357367 ~ 3359859 (-)
G305818 NA non-coding upstream 88332 3363618 ~ 3364509 (-)
G305772 NA other downstream 546280 2724594 ~ 2724944 (-)
G304459 NA other downstream 2038932 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2174306 1086404 ~ 1097333 (-)
G304369 NA other downstream 2212304 1058325 ~ 1058920 (-)
G304368 NA other downstream 2215502 1055304 ~ 1055722 (-)
G306014 NA other upstream 402588 3677874 ~ 3679488 (-)
G306679 NA other upstream 1221128 4496414 ~ 4505953 (-)
G306792 NA other upstream 1529109 4804395 ~ 4865973 (-)
G306902 NA other upstream 1878382 5153668 ~ 5154133 (-)

Expression


Co-expression Network