CI01000092_03307794_03308422


Basic Information

Item Value
gene id CI01000092_03307794_03308422
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3307202 ~ 3308514 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03307794_03308422.mRNA
ACTATAGCCCCTTTGAGGAAGTGATGTGAATGCAACGCATACTTCTTTATGTATCAACACCACTGAATGGTGACATTGTTGCAACAGCGAAAATGGAAAACAACAAAATGGGTTTAGCAGAAAATGTTTTCCAGACAATTGAGCTTACAGAATTGGTATCTCACAAGACCTCCTCTACGTCATGGAGATTTGCTGCTAATAGAAATATGCAGAGAATTTTCAGAATTTCTCTTGGCCCCTGCACTTTCAGTTAGAAATGGTTTGATATTTCTGACATCATGTTTAGGAAGTGAGTCTTGTTTTTTGTACATGGTTTAAAGTGAGGTAAGTTTCTTTTACAGTCACATAGGTTCTGCATAGGTTCTGTCAAGCACAGTTCAACTAAAAATTAATTGTTAAGAGCAAAAACTGTAATCAGTAATTGACAGAAATACAAAGTCCTTGACACAAAGCGCAAGAATACTTATTGTAAATAATGTGGTGTGATCAGGTTAACCATCCGAGCATACAGTGGAAGATAATGGCGCAACGACCAAAAACGAGATTTCAAGATTTGTTATTTGCTAGCCTGTAGCATTAGCAGCTGGTACATTTTCATTTAATAGACAGAACATGCTTACAGCCCTGAGTAAAAGGTAAGTTTTCATATATACATTTTAAATGTGTATATCAGCTAAAAGTTTACTCTGTGAACTTTTAAAAATGCTCTAGCATAGATAGTCTCAAACATGACAAAAATACAATTTGGTTGTGAAGTTCAATTTGAACAAAAAAAACCCCCCAAAAAACAAAAACAAACAAAAAAAAAAAAAGCACGAAGAAGGTCTTTGGTGCGCTGATATTAAA
>TU347595
CGAGCATACAGTGGAAGATAATGGCGCAACGACCAAAAACGAGATTTCAAGATTTGTTATTTGCTAGCCTGTAGCATTAGCAGCTGGTACATTTTCATTTAATAGACAGAACATGCTTACAGCCCTGAGTAAAAGGTAAGTTTTCATATATACATTTTAAATGTGTATATCAGCTAAAAGTTTACTCTGTGAACTTTTAAAAATGCTCTAGCATAGATAGTCTCAAACATGACAAAAATACAATTTGGTTGTGAAGTTCAATTTGAACAAAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03307794_03308422.mRNA False 846 mRNA 0.35 2 3307202 3308514
TU347595 True 276 lncRNA 0.33 1 3307272 3307547

Neighbor

gene id symbol gene type direction distance location
CI01000092_03271224_03274775 DSCAM coding downstream 31916 3271224 ~ 3275286 (-)
CI01000092_03224848_03225687 NA coding downstream 81407 3224461 ~ 3225795 (-)
CI01000092_03103762_03184280 DSCAMB, DSCAM coding downstream 122922 3103105 ~ 3184280 (-)
CI01000092_03086245_03088783 NA coding downstream 218084 3086208 ~ 3089118 (-)
CI01000092_02933754_02957495 BRWD1 coding downstream 349565 2933754 ~ 2957674 (-)
CI01000092_03365550_03416277 ATM coding upstream 56493 3365007 ~ 3416277 (-)
CI01000092_03418301_03428309 ATM coding upstream 109787 3418301 ~ 3428309 (-)
CI01000092_03600064_03611514 MEIS3 coding upstream 291400 3599914 ~ 3612148 (-)
CI01000092_03614992_03615400 NA coding upstream 305923 3614437 ~ 3616983 (-)
CI01000092_03630767_03645397 PRSS16 coding upstream 322112 3630626 ~ 3646156 (-)
G305817 NA non-coding downstream 31844 3226834 ~ 3275358 (-)
G305813 NA non-coding downstream 223556 3051910 ~ 3083646 (-)
G305898 NA non-coding downstream 262249 3044742 ~ 3044953 (-)
G305897 NA non-coding downstream 262704 3044240 ~ 3044498 (-)
G305896 NA non-coding downstream 265001 3041986 ~ 3042201 (-)
G305922 NA non-coding upstream 1579 3310093 ~ 3310299 (-)
G305811 NA non-coding upstream 48332 3356846 ~ 3357075 (-)
G305805 NA non-coding upstream 48853 3357367 ~ 3359859 (-)
G305818 NA non-coding upstream 55104 3363618 ~ 3364509 (-)
G305793 NA non-coding upstream 124757 3433271 ~ 3442950 (-)
G305772 NA other downstream 582258 2724594 ~ 2724944 (-)
G304459 NA other downstream 2074910 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2210284 1086404 ~ 1097333 (-)
G304369 NA other downstream 2248282 1058325 ~ 1058920 (-)
G304368 NA other downstream 2251480 1055304 ~ 1055722 (-)
G306014 NA other upstream 369360 3677874 ~ 3679488 (-)
G306679 NA other upstream 1187900 4496414 ~ 4505953 (-)
G306792 NA other upstream 1495881 4804395 ~ 4865973 (-)
G306902 NA other upstream 1845154 5153668 ~ 5154133 (-)

Expression


Co-expression Network