CI01000092_03365550_03416277 (ATM)


Basic Information

Item Value
gene id CI01000092_03365550_03416277
gene name ATM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3365007 ~ 3416277 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03365550_03416277.mRNA
TTTCTCTTCTCAGAGTTCTTCCATCACTGAGGGCAAAGACACTTTGCGGGAAGTTGAGAGTCTCTTCCTGCAGTTCAGTTTTGATGACACGCACCCCAGTACTGAAGTTACAGTTGATAGAGATAGTGTTTACTCAGAGAAACCACAGTTCACTGTTATTCAAGCTCTCAGAAGCAAACTAGAGCACAGTCTCCTGTCTGTCGCTGAGCAGCTCTTTAACTGCTACTCTCCTGATAGTTCAAACACTCCTCACGAGTGTGTGCTGCGCTGTGTTTCGCTGCTCACTGGAGTTCTGGCTGCTTACGTGTGTATTGGACTCCTCACGGAAGAACAGGCCTGTCACTCTCCCCTCTTCCTAAAAGCCAAGGCATTGGTTCAGGAATTTAGTCATTACATATCAACGGCAAAGAGCAGACTGGCTGAGAATGAGACCATCAAATCAGTTCAGTCAGTGATGCTGTTGTGCTCTGATAGTATTAGTAGAAGAGAAAAGGATGACAAAGTTTCCACCATCTCTCGCATTTTATTCCTGAAGACTTTGCCTGGGAGGTTGCTGAATGACTTGTGTGACATATCCAAGCAGTTGTTGACCAACTCGAGTAAAAAGGACAACACAGTCATGGAGAACGACCTAGTGGATGAAGATATGGATATGAGCAGAAACCAAACGGATAATCAGGAGGAGATTGATCTGTTTGAAGATGGAGATGGGGCACAAAACAGCACTTCCAGACCTCGCCCATCTAATGACGAAGCTGGCGATTCAAAGTTCAGCACAGGGACCAAGAGTGCATTATCTGAGGAGCATTTATCTAGACAAGACTTGGCCTTCTTGTCTGTGCTTGGATTCCTGTCGCTCTGTGCATCTTCAGAGCTCAACGGTGGATTCTCCTTCAAACCTCTGGACACACAACGCAAATTGCTCAAACTACTGGACCTCACAGACTTCTCTCAGATGCTTCACCTCCACATGTATCTTTCCCTGCTGAAGAAACTCCCAGCTGAAGTCACATCTCTGGATCCTGAAGAATTTGATGCTCTTCTCAAGCCTCTGGCAGATGTTTGTTCTCTCTATCGGCAAGACCAGGAGGTGTGTGCTGCCGTCCTGTGCTCTCTTCTGCCATCCATCCGCTGTCTGGGCCGCTCTCCACCTGTGAGCGAGCAGGACGATGACATGGCACATATCAGAGGAGCTCTGCTCAAAGTCATGTCAGGATTCTGCATCTTAGGCAAATCTGGCAAATGTACTTCATCTGTGAGAGTGGCTCTAAGACAGTGTTTACTGGCTTTGCTGGAGCTGAAACTGATCTTCTATTATTCACACGAACTTTTAAATTCTAGCTTGTTCCTTAAAAAAGGACTGGATGGCGGTGGGAAGATGATGCTTCCTCTGAAGAATCAGCAGACGGCCTTTGAGAACATTTACCTCAAGGCTCAGGAGGGAATGAGGGGGCAGAAGAACTGTCCTTCAGAAGACTTACCCGACGAGACCTTTAATCGACGGGCAACCTTGCTGAAAAGTGTCTCTATGGTGATGTCCTGCAGCCCTGTGTGTGAGAAGCAAGCCCTGTTCGCGCTCTTTCAGTCCTACAAAGAGAACAACATTGATGAACAGCTCATCAGAAAGGTGCTAAGAGGCGTGTCCCGGTCGCTTGGATACAGGGACTCTAAGAGTTTAATTAATTCACACCTATATTACCTAGTGGCCGAGTGGCTGAACCAAAAACAGTCCGACTCGAGTTACACGCTGCAGTCCTTCCCCTACACACTGCTGGGCTACTGCAGTCTGGAAGAGTTTTACAGGGAGTTGGATCCTGCGCCAAACCCGCCATTCTTCAGCTCATATGTGATCAAAGCCACGCTGGATTACCTGAGCAAATGCCACAGTGCCAGCCACAAGTCTCTAGTCGCCATCCTGTCCAAGACTCCCATGTCCATTCAGAGGATTCTCATAGCAATCTGTCAGAAGGCTGCTGAGACCACCAACGCCTACGAGAGGCACCGCATACTGATGATGTACCACCTTTTTGTCAGCCTGCTGCTCAGGGAGGTGAAGGACGGGCTGGGCGGAGCCTGGGCATTTGTGCTGCGTGACATCATCTATACACTTATTCACCACATCAACAGCAGATCATGTCAGCAGGATGAGGTGTCCACTCGCAGTCTGTCCCTGTGCTGTGACCTGCTGTCGCTAGTCTGTCAGACGGCTGTGGAGTACTGTGATGATGCTCTAGAGAGCCACCTGCAGGTCATTGTGGGTACTCTCACAGCACAGGTCACTGAACAGTCTGGCATATCTCAGCAGGTCCTCAGTCTGCTAAGGTTCCTGGTAATAGAAAACCCGGAGAACCGAATGTTGAGAGAGTCCATTCCCCTGTTGGAGCCTTTCCCTGACCGACCAAACTTCAGAGAGCTCAGAGCCGCCCAACATGCGCTCAAATACAGCTCAGGAGCCTTCACTCTCAGACAGGAAATTGAGCATTTTCTGTCTGTTACGTCTTGTGATTCTTTGCCCCTGGCTCGTTTGGAGGGATTGAAAGATTTGAAAAGGCAACTTCAAAGCCATAAACAGCAGATAGGACAACTTTTGAAAGAATGCCATGCCGATCCTGCCAGCTGTATTCTGGTTAAGCTGGTTCTAAACCTTCTTCAGCTTTGCAAAATCGCAGCTAACCACCCTGGTGGAGGAGACATCTTGATGGATCTTCATCATCCTGAACTGCATGGACAACGCACTCACGCATCACAGGCACTTCATTACTACTTCCTTTTCCAGATCTTGCACTTTCACACTGTTCTGGATCAACTTAAACACAAATTCACAAAAAAAAACATTGTGATTTCTAATAGCATTTATTATGAATGTACCTGCACCAATTACATCACAGTTCTCTCTCTCACTCCTTTTTATTTCAGTATTGCGGAGCCCATCATGACCATGGAAGTGACCTCAGAGTCCAGAGACAGGCTGGACAGTTCTGACCTTTGGTTGGTTCAGCCTGGTGGACACAAGGACTGGTTAATGAACCTGTGTATGGCCCTGTTAGACAGCGGAGGGGCCCGAAATGAAGCTCTGCTGCTCACCAGACCTTTATGTGAGGTAAACCCAGATTTTTGTCAGAGGATGTTGCCGCTCTTTGTTCATGATATTCTTCTGGGAGATGTGGACGGCTCCTGGAGGCAGCTGTTATCCACACACATCCAGAGTTTCTTCAGTCAGTACCACAGACCCTCCACACCCACCAGCCGCTCCACCACGCCCATGCTCTCTGATTCAGGGAACAGTATTGATGTTGCCAACCAGAGCCAGATAGACAAAACCTCACTCCGCAGCATGCTGGCGGTCATAGACTATCTCAGACAACAGAGCCGCCCAGTGGCACCTGGAAGTAATGAATATGGGACGGTGTGTGACTCAAATTTTTGGCTGGATCTGAATTATCTGGAGGTGGCTGGAGCCGCCCAGATGTGTTCCGCCCATTTCACTGCTCTCCTGTACTCCGAGATCTACGTGGACAAGATCAGATCCAACATGGAGCAGATCCAAAGGCCACAGTCGCGAGTGTCGAGACGGATCACGTTTGAGGAGAGTAGCCAGACGCTGTCCATCAGCAGCATGAATGAAAAGAGTTTAGAAGACTCTGGCATCAGTCTACAGGATCTTCTGATTGAGGTGTACAGGTGCATTGGAGAACCGGACAGCCTGTATGGATGTGGAGGGGGAAAGTTAATCAGTCCTTTGACTAGAATTCGAACCTATGAACATGAGGCCATGTGGGATAAGGCTTTGGTTGCATATGACCTTCACTCCAACCTCCCAGAGGTCACGCGACAGATTGGCATAGTAGAGGGTCTGCAGAACTTTGGCTTGTGTAGTATTCTAAGCACGTATCTTCACGGTCTGGAGAGAGAGGGGGTGGAGTGGAGTCCTGAACTCCGAGAGCTACGCTTTCAGGCAGCCTGGAGAAGCACACAGTGGGACTGTGACCTGCCTGAGAGAAATGAGAAGCTGAAGCCTGGCATCAACGAGTCCTTGTTCATTGCCCTCCAAGCTTTGAGAGATAGAGAATTGTCCCTATTTGAGCAAACGCTCAACTATGCCAGAGGTCACGAGGTCGAGGAGTTGTGTCGTGGTAGTCTGGAGGCCGTGTCTTCACTCTATCCTGCTCTCTGTAACCTGCAGAGGATCAGTGAACTGCGGGGTGTCGAGGAGCTTTTCTCGAGACGGACCCGCCGCAGAGGTAAGGTTTTAATCGCGGATGCGGAGCGGATGCAGCGCGGAGCCACGGCGGGTCCGCAATCCGCCTTCGTTGCAGATCCGTCACTGCGCGCAAGTGGACGCCGATACGGGCCTGTAACTGACTCCAGCCTCAATGAAGTCTACAGGAAGTGGCAACAGCACTCTGATCTCTTAACCGACAGTGATTTCAGTCTGGTAGAGCCGGTCTTAGCCTTGCGTTCCTCCATACAGGAAACATTGATTTCCTCAGAGACAGACCCAGACAGGAAGAACTACCTGATTTCTGCCTATTCCTCCCACCTGATGGAGCTGTGCAAACTGGCTCGTTCTGCAGGCAACACACAGCATAGCCTGGTAAGTGGTGGCGGCGGCGGCAGCAGCTCATGGGCCTGGCAGCTGGAGGAGGCACAGGTGTTCTGGGTGAAGAAGGAACACGGGCTGGCTCTGGGACTGCTCAAACAGATGATCCAAAAACTAGAGGATCTGGTGTGTGTGAACCCTGCTGTGGTGCCGGTGTATTCTGAGTGTTTGAGACTGTGTGGAAGCTGGCTGGCTGAATCCTGTCTGGAGAGCCCTGCTATCATACTGGAGAAATATCTGGAGAGGGCTGTGGAGGTCATTGAGGACCACTGTGGTGGTTCAGACGCTAAACTACAGAGCCAGAAGACCCAGGCTTTCTTTTCGCTTGCCCGTTTTTCTGATGCACAGTACCAAAGCATCGAAAACTACATGAAGTCATCTGAGTTTGAGAACAAGCATGCTCTACTGGAGAAGGCCAAGGAGGAAGTTGACCTTATGCGGGAGAGGAAGGTCGGCAACAACAGATACACAGTGAAAGTTCAGAGAGAACTAGAGCTGGACGTCAAGGCTTTGGCTAACCTACAGGCGGACCGCAACCGCTTCCTCCTCAAGGCTGTGGAGAACTACATTCAGTGCCTGGAGCTGGGAGAAGAACATGACACCTGGGTCTTCAGACTGGCGTCCCTCTGGCTGGAGAATGCTGATGTCAAAGCCGTGAATGACATGATGAAGAGTGGTGTAAAGAAAATCCCGTCATATAAGTTCCTGCCCCTGATGTACCAGTTAGCTGCTCGAATGGGCACTAAAGTGTCCAGCTCTGTGACACAGGACGTGGGTTTTCATAATGTTCTAAACGAGCTGATCTGTCAGTCATCCCTTGACCACCCCCACCACACTCTCTTCATCATCTTGGCACTGGTCAACGCCAACAAGGATGAGAGTTTCTCTCGCAGTCGTGCATCCAAGAGCAGTGCCCGCCAACCTTCGCCTCTGGACTTGGAACGGGCTGAGGTCGCTCGTAACGTCATTGACGTGGTTCGTAAAAGGAGAGCCAAGATGGTCAAAGACATTGAGACACTTTGCAATGCCTACATCACTTTGGCATACATGGACGCCAGTCGCCATAAAACTGAAAAGAAAGCCATAACTATTCCACCGGAGCAACCCATCATGCACATCAAAGACCTCAATGATGTCATCATTCCCACCATGGACATCAAGGTGGATCCATCAGGCAGATATGAAGACCTTGTGACTGTCAAGTCATTCAAACCTTACTTTCACCTTGCTGGAGGCGTCAACCTACCCAAAATAATTGACTGTGTGGGTTCAGACGGCAAGAGCAGGAGACAGCTAGTCAAGGGTCAGGATGATCTGAGGCAGGACGCGGTGATGCAGCAGGTCTTTCATATGTGCTCCACCCTTCTGCAGCGCAATGCCGAAACTCGCAAGAGGAAACTCAACATCCGCCGCTACAAAGTGGTGCCGTTTTCCCAGCGCAGTGGTGTTTTGGAGTGGTGTTCTGGTACTGTGCCCATTGGAGAGTTCCTGGTGGACCCTCAGAAGGGGGCACACAAACGCTTCCGGCCACAAGACTGGCCCAACATGACCTGTCGCAAGAAAATGATGGAGGCTCAAAGGCTGGAATTTGATGGCAAACTTCAGGCTTTCACAGAGGTATGCCAGAAATTCCGTCCAGTATTCCGATACTTTTGCATGGAGCGCTTCCTGGACCCTGCTGTGTGGCTGGAGAGACAGCTAGCATACACTCGCAGTGTGGCCACGTCTTCTATTGTGGGTTACATCGTTGGCCTGGGCGATCGGCACATTCAGAACATTCTGATTGATGAACAGACAGCAGAACTGGTCCACATAGACCTTGGTGTTGCGTTTGAGCAGGGGAAAATCTTGCCCACCCCTGAGACAGTTCCGTTCAGACTGTCTCGAGACATTGTGGATGGGATGGGCATCACAGGGGTGGAGGGCGTCTTCCGGAGATGTTGTGAGAAGACAATGGAAGTTATGAGGAGTTCTCAGGAAGCCCTGTTGACCATTGTGGAGGTGTTGCTGTACGACCCTCTGTTTGATTGGACCATGAACCCTCTGAAGGCCTTCTACCTGCAGCAGCACGACGAGCAGGCGGAGCTCAATGCCACGCTCAACCCCACACCGGGTGGAGACGAGATCGACACCCACCGCAAGGCCAGTGACAGTCAGAGCTTCAATAAAGTGGCGGAGCGGGTGTTACTCCGACTGCAGGAGAAGCTGAAGGGTGTCGAGGAGGGGACGGTGCTCAGCGTGGGGGGGCAGGTAAACCTCCTCATTCAGCAGGCAATGGACCCCAAAAACCTCAGCCGCCTCTTCCCCGGATGGCAGGCCTGGGTCTGATACACATGCTTGTGAGCATTATGATTTATATACCAAAGAAAATCTGCCATACAAAACAATCTAAACAAGCACTTGAACAAATAGCAGGTACGGTGGAAATGTCTTATGACTGTATTCTCATGCGCTTCGTAACATGAAATGTTTATGAACTCTGTCCATCTTTAATACATGTTGCACTATTAGCCTGTATATAATTAAATGAAATGAATATATTTAGCGACGATCATTATAGCCTAATACTTACAGTGAACAGTTGAACAGTCTGATCTGTTTTTGTAATGTTTTGTTAAAAACATATTTCAAACGATAATGCTTCTGCGACAAATTGAAAACAGATTTTCATTCAATATCACCACAAGCTTTGAATTGTATGTTTTAAATATGAATGTTTACTTAATAATAGATAGAGGAATTGAAAAGAAAGAGTAAAATTAAACAACATCCGTTGATGATCAAAGTTCGGTTCATGTAGTAATGTGCACCTTATGTACAGTACAGATATAAATGGTTGATCTTTTCTTGGCCTATTGGAAGCACAATAAA

Function

symbol description
atm Enables kinase activity. Acts upstream of or within DNA damage checkpoint signaling; intrinsic apoptotic signaling pathway in response to DNA damage; and regulation of G2/M transition of mitotic cell cycle. Predicted to be active in nucleus. Is expressed in brain; immature eye; and post-vent region. Human ortholog(s) of this gene implicated in breast cancer; endometrial cancer; neurodegenerative disease (multiple); pancreatic cancer; and senile cataract. Orthologous to human ATM (ATM serine/threonine kinase).

NR:

description
ataxia telangiectasia mutated, partial

GO:

id name namespace
GO:0000723 telomere maintenance biological_process

KEGG:

id description
K04728 ATM, TEL1; serine-protein kinase ATM

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03365550_03416277.mRNA True 7471 mRNA 0.49 48 3365007 3416277

Neighbor

gene id symbol gene type direction distance location
CI01000092_03307794_03308422 NA coding downstream 56493 3307202 ~ 3308514 (-)
CI01000092_03271224_03274775 DSCAM coding downstream 89721 3271224 ~ 3275286 (-)
CI01000092_03224848_03225687 NA coding downstream 139212 3224461 ~ 3225795 (-)
CI01000092_03103762_03184280 DSCAMB, DSCAM coding downstream 180727 3103105 ~ 3184280 (-)
CI01000092_03086245_03088783 NA coding downstream 275889 3086208 ~ 3089118 (-)
CI01000092_03418301_03428309 ATM coding upstream 2024 3418301 ~ 3428309 (-)
CI01000092_03600064_03611514 MEIS3 coding upstream 183637 3599914 ~ 3612148 (-)
CI01000092_03614992_03615400 NA coding upstream 198160 3614437 ~ 3616983 (-)
CI01000092_03630767_03645397 PRSS16 coding upstream 214349 3630626 ~ 3646156 (-)
CI01000092_03652598_03660979 ECH1 coding upstream 236321 3652598 ~ 3661104 (-)
G305818 NA non-coding downstream 498 3363618 ~ 3364509 (-)
G305805 NA non-coding downstream 5148 3357367 ~ 3359859 (-)
G305811 NA non-coding downstream 7932 3356846 ~ 3357075 (-)
G305922 NA non-coding downstream 54708 3310093 ~ 3310299 (-)
G305793 NA non-coding upstream 16994 3433271 ~ 3442950 (-)
G305816 NA non-coding upstream 31012 3447289 ~ 3449586 (-)
G305990 NA non-coding upstream 46137 3462414 ~ 3462976 (-)
G305809 NA non-coding upstream 54178 3470455 ~ 3528052 (-)
G305814 NA non-coding upstream 105682 3521959 ~ 3522386 (-)
G305772 NA other downstream 640063 2724594 ~ 2724944 (-)
G304459 NA other downstream 2132715 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2268089 1086404 ~ 1097333 (-)
G304369 NA other downstream 2306087 1058325 ~ 1058920 (-)
G304368 NA other downstream 2309285 1055304 ~ 1055722 (-)
G306014 NA other upstream 261597 3677874 ~ 3679488 (-)
G306679 NA other upstream 1080137 4496414 ~ 4505953 (-)
G306792 NA other upstream 1388118 4804395 ~ 4865973 (-)
G306902 NA other upstream 1737391 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location