CI01000092_03652598_03660979 (ECH1)


Basic Information

Item Value
gene id CI01000092_03652598_03660979
gene name ECH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3652598 ~ 3661104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03652598_03660979.mRNA
TGTTGTGACGAGTAACTTATTATTTTCAACCAGTTAAACAGATAAACCCACATCACTGGAGTTAGTGTTGTGATAGTCTTCATAAGCAGGTCTGTGATTGAGAATATATTGGTCAAAGGGCACTAATGGCACTTGCTTTCAGATCTGCGTTCAGAAAACAGGGTCTGTTCGTACCTTTCCTGAACGCTGTTAAAGGAATGTCTTCATCAGCAGGGCCCACCCCCCCCTTCACAACCCTGTCAGTCAGCCGGCCGGTTGACACCATCACTCACGTTGAGATCTGCCGTCCGGAGAAACGCAATGCGATGAACAAGGCATTCTGGCTTGAAATGGTTGACTGCTTCAATCAGATAGCTGAAGACTCAGAGTGTCGTGTCGTGGTTTTCTCAGGCGCTGGAAAGCTTTTCACTTCCGGTATTGACCTCATGGGCATGGCCAGTGATATTCTACAGCCTGAAGGAGACGACACAGCCAGGATCTCATGGAACGTGCGCCGCATTATAGCTAAATACCAAGAGACCTTCTCTGTTATTGAAAAGTGTCCAAAACCAGTGATTGTGGCCGTTCATGGAGCATGTATAGGTGGAGGAGTTGACTTAATCACAGCATGTGATATTCGACTGTGTACACAGGATGCCTGGTTTCAGGTCAAGGAGGTTGACATTGGCTTGGCAGCTGATGTTGGGACTTTGCAACGTCTCCCCAGAGTGATTGGAAGTCGAAGTCTAGTAAACGAGTTGGCTTTCACTGCAAGGAAGCTGTACGCTGATGAAGCCAAGAGCTGTGGATTGGTCAG

Function

symbol description
ech1 Predicted to enable delta3,5-delta2,4-dienoyl-CoA isomerase activity. Predicted to be active in mitochondrion.

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K12663 ECH1; Delta3,5-Delta2,4-dienoyl-CoA isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03652598_03660979.mRNA True 796 mRNA 0.48 8 3652598 3661104

Neighbor

gene id symbol gene type direction distance location
CI01000092_03630767_03645397 PRSS16 coding downstream 6442 3630626 ~ 3646156 (-)
CI01000092_03614992_03615400 NA coding downstream 35615 3614437 ~ 3616983 (-)
CI01000092_03600064_03611514 MEIS3 coding downstream 40450 3599914 ~ 3612148 (-)
CI01000092_03418301_03428309 ATM coding downstream 224289 3418301 ~ 3428309 (-)
CI01000092_03365550_03416277 ATM coding downstream 236321 3365007 ~ 3416277 (-)
CI01000092_03682820_03688497 NA coding upstream 21310 3682263 ~ 3688531 (-)
CI01000092_03702024_03712418 NA coding upstream 39842 3700946 ~ 3712418 (-)
CI01000092_03733899_03743505 NA coding upstream 71853 3732957 ~ 3743557 (-)
CI01000092_03750015_03753913 CYP2Y3 coding upstream 88136 3749240 ~ 3753976 (-)
CI01000092_03762168_03785262 NA coding upstream 99716 3760820 ~ 3785407 (-)
G305810 NA non-coding downstream 53869 3597328 ~ 3598729 (-)
G306053 NA non-coding downstream 61619 3590733 ~ 3590979 (-)
G306051 NA non-coding downstream 65489 3586867 ~ 3587109 (-)
G306050 NA non-coding downstream 75067 3577308 ~ 3577531 (-)
G306041 NA non-coding downstream 100019 3550840 ~ 3552579 (-)
G306017 NA non-coding upstream 10341 3671445 ~ 3674434 (-)
G306010 NA non-coding upstream 15663 3676767 ~ 3677768 (-)
G306083 NA non-coding upstream 63923 3725027 ~ 3725677 (-)
G306089 NA non-coding upstream 81376 3742480 ~ 3743248 (-)
G305772 NA other downstream 927654 2724594 ~ 2724944 (-)
G304459 NA other downstream 2420306 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2555680 1086404 ~ 1097333 (-)
G304369 NA other downstream 2593678 1058325 ~ 1058920 (-)
G304368 NA other downstream 2596876 1055304 ~ 1055722 (-)
G306014 NA other upstream 16770 3677874 ~ 3679488 (-)
G306679 NA other upstream 835310 4496414 ~ 4505953 (-)
G306792 NA other upstream 1143291 4804395 ~ 4865973 (-)
G306902 NA other upstream 1492564 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location