CI01000092_03682820_03688497


Basic Information

Item Value
gene id CI01000092_03682820_03688497
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3682263 ~ 3688531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03682820_03688497.mRNA
AGTTTGAATTCCTTTAATGTATCTGTTTTGACAAATGGCTGCTGCTAATGGTTCAATAAAAATGGTGAACAAAGGGGGGGAGAGCGGGCATCCCTGTCTAGTTCCCCAGTGCAATCTGAAGCTACGTGATGTTAGTCCATTGGTGATGACAGTGGCTGAAGATTGCCAAATGCGCTTATTACTTGAACTATTAAATCTATCTATTGCTGTGTCGAGAACTGTGTTGAAATCGCCTGCTATTATGACTGGACAGTTGGAAAGATTTGAGACGGAGGAAAAAAAGAGAGTCGGGACGGGGTCTTTTGGAGTTCGGAGTGGGGTTGCCTTTGCTTTTTTTGTTGTCGTCTGGTTTATCCTTGTTCATGATGCAGTAAAGACTGTTATAATGTTGAGCCATTGTGGTGTCACAGATGAAGGTTGTGATGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACATCTGAGAGAACTGAATCTGTCTAGGAATAGTCTAGGAGACAGAGGAGTGATGCTGCTCTCTGCTGGACTGAAGAATCTTCACTGTAACCTGGAAATACTGAGGTTGAACAGTTGTGACATCACAGGTGAAGGTTGTGCTGATCTGGCTTTATCTCTGAGATCAAACCCCTCACACCTGAGAGAACTGGATCTGTCTAGGAATTATCCAGGAGACAGAGGAGTGATCCTGCTCTCTGATGGACTGAAGAATCCTCAATGTAAACTGGAAATACTGAGGTTGAGTGGTTGTGGTGTCACAGGTGAATATTGTGCTGCTCTGGCTTCAGCTTTGAGATCAAACCCCTCACATCTGAGAGAACTGGATCTGTCTGGGAATTATCTAGGAGACAGAGAAGCGATGCTGCTCTCTGATGGACTGAAGAATCCTAAGTGTAAACTGGAAATACTGAGGTTGATTTATTGTGGTGTCACAGGTGAAGGTTGTGATGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAGAAGTGGATCTGTCTAGGAATGATCTAGGATACAGTGGATTGATGCTGCTCTCAGGTGAACTGAGGAATCCTCAGTGTAAACTGGAAATACTGAGGTTGATTTATTGTAATTTCACAGATGAAGGTTGTTCTGCTCTGGCTTCAGCTCTGAGATCAAGCCCCTCACACCTGAGAGAACTGAATCTGTCTAGGAATAAACTAGGAGACAGAGGAGTGATGCTGCTCTCTGCTGGACTGGAGAATCCTCAGTGTAAACTGGAAACACTGAGGTTGAGTGATTGTGACATCACTGGTGAAGGTTGTGCTGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAGAACTGAATCTGTCTGGGAATAAACTAAGAGACTTAGAAGTGAAGCTGCTCTCAGATATACAGGACAATTCACATCAGTTGAAAATTCTGTTTTAAATTGTTCAAAGCATAATTTCCTGGTTCCCTTTCATGGGAACTGTCGACGCTACGTCATATGACGTTATGGGAACCTTCTGCGTGATTGTGTCGTGAAGCACTCTTGTATCTAACCAATGATGAGACGAGACGTCAGAGGCGGGTGACGTCACGGACCAGGAAACTATAAAGCATACCCAGAACAAAGAACGCTAGCTTCTGTTGTCTTCAGCAAGCGCTCTGTGTTATCGTGTGTCTTATTTGGTGTTGTTTGTCTTATTACATAAACAAGTCACAATCTCTTCGTCTGAGGACAAGAGTATCTCACACCAATCCATATATTTATATATAAAAAAACAGCAGTTGAATGGGAGTTGAGCATGCCCAGGCAGCTCTTGAGGGAGCGGTCTGTGCACACTGTAAAAAA
>TU347697
TCTTCAGCAAGCGCTCTGTGTTATCGTGTGTCTTATTTGGTGTTGTTTGTCTTATTACATAAACAAGTCACAATCTCTTCGTCTGAGGACAAGAGTATCTCACACCAATCCATATATTTATATATAAAAAAACAGCAGTTGAATGGGAGTTGAGCATGCCCAGGCAGCTCTTGAGGGAGCGGTCTGTGCACACTGTAAAAAAAAAAAAACTCACTCTCAGAACACTGTGTTCCTGTGTTCCCCGCGGATCGGGTCCCGCTTCTGCTGAGGCAGAGCGGAGGCTCCATTCGTGGGGTTCACAATTGGATCTGACAGAGGGATTAGAGACGGGCGCCGCCCTTTCTCTGCCCTTA

Function

NR:

description
Zgc:136791

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03682820_03688497.mRNA False 1838 mRNA 0.44 9 3682414 3688531
TU347697 True 353 lncRNA 0.47 1 3682263 3682615

Neighbor

gene id symbol gene type direction distance location
CI01000092_03652598_03660979 ECH1 coding downstream 21310 3652598 ~ 3661104 (-)
CI01000092_03630767_03645397 PRSS16 coding downstream 36258 3630626 ~ 3646156 (-)
CI01000092_03614992_03615400 NA coding downstream 65431 3614437 ~ 3616983 (-)
CI01000092_03600064_03611514 MEIS3 coding downstream 70266 3599914 ~ 3612148 (-)
CI01000092_03418301_03428309 ATM coding downstream 254105 3418301 ~ 3428309 (-)
CI01000092_03702024_03712418 NA coding upstream 12415 3700946 ~ 3712418 (-)
CI01000092_03733899_03743505 NA coding upstream 44426 3732957 ~ 3743557 (-)
CI01000092_03750015_03753913 CYP2Y3 coding upstream 60709 3749240 ~ 3753976 (-)
CI01000092_03762168_03785262 NA coding upstream 72289 3760820 ~ 3785407 (-)
CI01000092_03841542_03853786 BACE1 coding upstream 151806 3840337 ~ 3853992 (-)
G306010 NA non-coding downstream 4646 3676767 ~ 3677768 (-)
G306017 NA non-coding downstream 7980 3671445 ~ 3674434 (-)
G305810 NA non-coding downstream 83685 3597328 ~ 3598729 (-)
G306053 NA non-coding downstream 91435 3590733 ~ 3590979 (-)
G306051 NA non-coding downstream 95305 3586867 ~ 3587109 (-)
G306083 NA non-coding upstream 36496 3725027 ~ 3725677 (-)
G306089 NA non-coding upstream 53949 3742480 ~ 3743248 (-)
G306120 NA non-coding upstream 326254 4014785 ~ 4015061 (-)
G306121 NA non-coding upstream 337233 4025764 ~ 4026076 (-)
G306123 NA non-coding upstream 338843 4027374 ~ 4027599 (-)
G306014 NA other downstream 2926 3677874 ~ 3679488 (-)
G305772 NA other downstream 957470 2724594 ~ 2724944 (-)
G304459 NA other downstream 2450122 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2585496 1086404 ~ 1097333 (-)
G304369 NA other downstream 2623494 1058325 ~ 1058920 (-)
G306679 NA other upstream 807883 4496414 ~ 4505953 (-)
G306792 NA other upstream 1115864 4804395 ~ 4865973 (-)
G306902 NA other upstream 1465137 5153668 ~ 5154133 (-)

Expression


Co-expression Network