CI01000092_03855138_03858761 (TBX10)


Basic Information

Item Value
gene id CI01000092_03855138_03858761
gene name TBX10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3855138 ~ 3858761 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03855138_03858761.mRNA
ATGAGGGGCGGACGTGCAGCAAAGCTCCTGAAGTTGCCAGTGTCAGAGTTCAGCTGGAAATGCAAAGCCTGTGGCGGCAGTTTGACCAGCTGGGCACCGAAATGATTGTAACAAAAGCTGGAAGAAGGATGTTTCCTACATTTCAAGTACACATTTCAGGCATGGACCCAGCAGCAGAATATGTTCTTCTAATGGACTTTATTCCTGTTGATGACAAACGATACAGGTATGCTTTCCACAGCTCTTCCTGGTTGGTAGCGGGACGTGGAGATATAGCTGCCCCAGGACGAGTGCACTTCCATCCAGACTCACCCGCACGGGGAGCCCAGTGGATCAAACAGACGGTCTCATTTGACCGCCTCAAACTCACCAACAACCTGCTGGACGATAATGGCCATATGATCCTGAACTCCATGCACCGCTACCAGCCGCGGCTGCACGTGGTGCTGGTTGACAGGAGCAGAAACAGCCAGCGCTTCGCTCACCGCAACTTCTGCACTTTCAGCTTCCCAGAAACCCGCTTCATCACAGTCACCGCCTACCAGAACCACAGGATTACCCAGCTGAAGATCGCTTGCAACCCCTTTGCGAAAGGCTTTCGTACAGCAGATTCTGAAAACAGACATTCAGCTCAATGCCAAACTGAATCTCCTCAACTATCTTTGCCCTGGAACCTGTTTGAGGGAACATCTGTGACCAGCGCC

Function

symbol description
tbx10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

GO: NA

KEGG:

id description
K10175 TBX1; T-box protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03855138_03858761.mRNA True 704 mRNA 0.52 6 3855138 3858761

Neighbor

gene id symbol gene type direction distance location
CI01000092_03841542_03853786 BACE1 coding downstream 1146 3840337 ~ 3853992 (-)
CI01000092_03762168_03785262 NA coding downstream 69731 3760820 ~ 3785407 (-)
CI01000092_03750015_03753913 CYP2Y3 coding downstream 101162 3749240 ~ 3753976 (-)
CI01000092_03733899_03743505 NA coding downstream 111581 3732957 ~ 3743557 (-)
CI01000092_03702024_03712418 NA coding downstream 142720 3700946 ~ 3712418 (-)
CI01000092_03860647_03862519 NA coding upstream 1671 3860432 ~ 3863147 (-)
CI01000092_03883093_03883504 NA coding upstream 24206 3882967 ~ 3883707 (-)
CI01000092_03890410_03901625 NA coding upstream 31649 3890410 ~ 3901625 (-)
CI01000092_03940545_03951203 NA coding upstream 81567 3940328 ~ 3951322 (-)
CI01000092_03957253_03983692 LIMK1, LIMK1A coding upstream 97960 3956721 ~ 3983692 (-)
G306089 NA non-coding downstream 111890 3742480 ~ 3743248 (-)
G306083 NA non-coding downstream 129461 3725027 ~ 3725677 (-)
CI01000092_03682820_03688497 NA non-coding downstream 172523 3682263 ~ 3688531 (-)
G306010 NA non-coding downstream 177370 3676767 ~ 3677768 (-)
G306017 NA non-coding downstream 180704 3671445 ~ 3674434 (-)
G306120 NA non-coding upstream 156024 4014785 ~ 4015061 (-)
G306121 NA non-coding upstream 167003 4025764 ~ 4026076 (-)
G306123 NA non-coding upstream 168613 4027374 ~ 4027599 (-)
G306139 NA non-coding upstream 247204 4105965 ~ 4106251 (-)
G306142 NA non-coding upstream 253243 4112004 ~ 4116902 (-)
G306014 NA other downstream 175650 3677874 ~ 3679488 (-)
G305772 NA other downstream 1130194 2724594 ~ 2724944 (-)
G304459 NA other downstream 2622846 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2758220 1086404 ~ 1097333 (-)
G304369 NA other downstream 2796218 1058325 ~ 1058920 (-)
G306679 NA other upstream 637653 4496414 ~ 4505953 (-)
G306792 NA other upstream 945634 4804395 ~ 4865973 (-)
G306902 NA other upstream 1294907 5153668 ~ 5154133 (-)

Expression


Co-expression Network