CI01000092_04484800_04489910 (NEU4)


Basic Information

Item Value
gene id CI01000092_04484800_04489910
gene name NEU4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4484233 ~ 4491148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_04484800_04489910.mRNA
AGCGTTGTGAATGTGGCCCTATAGCTAACCAACCCATCTCCCCCAAATAAAACAAATCATCCCAGGCTGAATAAATGTACAGATGCAATCTTGGATTGGCTTTTATTTTTCATTCTGTCTGCTTCACTCTGCTGACAAGTCAAGCCCACTTCTAGGTCAGTGCACAAACAGCGAACATGGCACTGAATGGATCACCATGTAATAGACAAGTCTGTGCTATATAGTGCACTTGTCACAAACTAACACGCTCACTTTCACACACTTGCACTTGATCTCACACGTCCTCGTATCTAACCCTTATCATCTCACGACGCTGCTCTCGTGTATCCTGCCTGTTTGCTGTAAGTACCCTTTTTGTCCTCTGGTATTTATTGATTTCTTTTAGCTAAATGGTTTGTTTTTGAGAAATTGAATGTTTAACACAATTACCGAAGAAAAAGTCTGTGAAACAGCTTGTGCTCGTCCACACCAGAAAGTGGATTTTGCAGACATGAGTGTGTTTTTGTCCTCATAATAAGAGACAGTCATTTTCTGTATATTTATTGGAATTATTACAGCAATATTAAGAATTATCACAGTAAGTGAACATCTCGTTCTTATGGAATGTTGTGTTTGTATATTTCATACTAACTATGGTTGTAATGAACAAACTGTTGTGAAGAAAGAACCATTACAAAGCTTGGCAGGCTTCGCTTTTCAGCTGTGAGTTGAGTTAAAAGCCAGAATAAGCGTTTTGTAAAAATGCTGACGTGAACCGGGCTTTCTGTTGCACTGTCCAACTGTCTTTCTTTTAACACAATAGTCCTCACTGACTGTCACACTTTCTGCATGTATTTTGTGTGTGTGTGCACTTTTCTTTATCACCAAGTAACTTTACTTCCTTAAAAGTTGGAAGACTTTAGGAAGGCTTTTTCTTGGTTTTAAATGAATGACTGTATGACTTCAGGTCATTAGTGAAACAGGAGATTTTCAGCAGAATGTCCTAGCTGCTCATTTCCACATTATGAAAATCAGATGGCAAGCAGGAGCTGTCAAGCACAAAAAAGCAAGTGTAAGCCACCATGCACTGAACATCTTTTCCTTCGCCGTTGTAGCTTCTGCATATTCGTGATGTGATTATTCATGACTCATGTGACACTTCACTGTTCGCTTTTAGTCATGTTGCATTCAAGTTTGAATTGGTGGATGAAAAAGGGTACTGACCTGAACTAATTTTTTATTTTTAGTTATTTGAGGCTATGGGGTCTCAGTACTTCCCAGCACGATCCGTGCTTTTCCAAAAGGAGCCGAGTGGAGTTACGTACCGTGTGCCTGCTTTGATCTACATTCCTCGTTCCAGCTGTTTCTTGGCCTTCTGTGAGGAGAGACTGACTCCGGCAGACGCTCAAGCACATCTGCTGGTCATGCGCAAAGGCACTTTTTATAAAAACTATGTGGAATGGAAAGACATGGAGGTGTTGAGTAGCGCTCGACTGGAGGGCTACCGCTCGATGAACCCTTGCCCCGTTTATGATGAGTTTACGGGCACCGTCTTCTTGTTTTTCATCGCTGTTCTGGGTCACACCTCTGAGTCTTACCAGTTAATTACAGGGAAGAACGTGACACGTCTTTGCTATGTGTCTAGCAGTGACCAAGGGGACACCTGGAGCTCTGTTACAGACCTTACCAGGACACTCATAGGGGACACCATCAAAGAGTGGGCCACTTTTGCTGTGGGTCCAGGTCACGGAACCCAATTAAAATCTGGAAGGCTAATAATCCCTGCCTACACCTACCATATTGACTGCAGAAATTGCTTCGGCAGGAAGTGCAAGACTTCGTCACACTCGTTTTGTTTTTATAGTGACACGCATGGAAATGTGTGGCATTTTGGAGAGGCGCTGTCTGCGCCAGAGAGCGTGGAGTGTCAGATGGTGTCGGTAGATCAGGAAGATGGAGTCAACATTTTGTACTGCAATGCCCGAAGTGTATCAGGTTGCCGGGTGCAGGCCATTAGTTTTGATAATGGAACTGTTTTTCACGACGGCCAGCTGGTGCCGAAACTGGTGGAGCCAAAAAATGGGTGCCATGGCAGTGTGATTGGATTTCCAGCCCCAGTCTACCAGCTCAGCCAATCCCAACACTTTCTGAGACAGTTGAGGTCCATCTACAGCCCACTGGCAGTCAGCATATCCCCAGCTCTGAGCTCTTCACAGAACTTCCTCCCTCCAACATGGGTGGTATATACTCACCCTACATGCTTGAATGCCCGCCGTGACCTGGGTGTTTACCTCAGTCTTCTGCCTCGAGACTCAGACAGTTGGTCAGGACCGTGGATCATATATGAAGGCCCTAGTGCATACTCAGACTTGGCCTATGTTGAGCTGATGTCTGCTGATGCCACAGCGGTTGCTGTCTTTGCCTGCCTTTTTGAGAACGGCACAAAGACGGCTTATGATGAGATTTCCTTCTGCATCTTCACACTGTATGAGCTAATCGACCACCTTCCACACAACAAACAACAAAGAAGTGGGTCAAAGAAGAGGAAAAGAATCTGGGAGTGCTGCTTTGTCTGCTGATTGTATGTGTAACCGTAAAATTCACAAGAATTGAAAAGCTGTCTCCTTTTAAATTATGGGTGTGAATTTGAATCTATCTATCTATCTATCTATCTATCTATCTATCTATTGTTGTGGAAAAATTCTTTATTCCTTTAGTGGTGAGAATGTAATGAACCAAACACTCAGGAAATGTCTTTGTTGATTTTATTCTTGCAAGAAGGTTGTTCAATGCAGATACAGAGTTCTACAGAGAAGAACACCCTCACACAGTGCTGGCTGTCTTATATACACCTATTATTGTTCCTTGTTACCACAAACCAATCATAACGCATGTTACCATATACGGATCAGAAGAATAAGAAAAAAGAAAGTGGTCTAAAACTTAGCAGATGCATCATTGAACTCCAAGCTGTCTAGATAAACACATTTGCACCTTTGCCTCGCTTCCTTTGTTAGTTTCAGAAGTGCTTCTTAAAATACAACAGCATAAGCAGTAATTTCCCACTGAACAAGCTGTTTTAAATGTCACATAAGACAGAGAGAAAACAAATTTCAATGCATAATTTTATAGATCAAGAAAATAAA

Function

symbol description
neu4 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including heart; integument; lens; pleuroperitoneal region; and solid lens vesicle. Orthologous to human NEU4 (neuraminidase 4).

NR:

description
Neu4, partial

GO:

id name namespace
GO:0001573 ganglioside metabolic process biological_process

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_04484800_04489910.mRNA True 3125 mRNA 0.43 3 4484233 4491148

Neighbor

gene id symbol gene type direction distance location
CI01000092_04413965_04426684 MFRP coding downstream 57549 4413965 ~ 4426684 (-)
CI01000092_04349339_04350441 NA coding downstream 133792 4349339 ~ 4350441 (-)
CI01000092_04330061_04333852 NA coding downstream 150229 4330061 ~ 4334004 (-)
CI01000092_04294820_04300366 SERB, PSPH coding downstream 183867 4294481 ~ 4300366 (-)
CI01000092_04029480_04033662 NA coding downstream 450571 4029403 ~ 4033662 (-)
CI01000092_04545522_04550438 NA coding upstream 54088 4545236 ~ 4550739 (-)
CI01000092_04612376_04613032 NA coding upstream 121025 4612173 ~ 4613191 (-)
CI01000092_04692404_04694159 OTOL1B coding upstream 200692 4691840 ~ 4695476 (-)
CI01000092_04730022_04742422 NMD3 coding upstream 238742 4729890 ~ 4742889 (-)
CI01000092_04822399_04827194 NA coding upstream 330758 4821906 ~ 4827194 (-)
G306664 NA non-coding downstream 24821 4458001 ~ 4459412 (-)
G306639 NA non-coding downstream 90285 4391897 ~ 4393948 (-)
G306575 NA non-coding downstream 249670 4234227 ~ 4234563 (-)
G306585 NA non-coding downstream 251987 4232010 ~ 4232246 (-)
G306581 NA non-coding downstream 256800 4226855 ~ 4227433 (-)
G306715 NA non-coding upstream 78379 4569527 ~ 4569737 (-)
G306681 NA non-coding upstream 87289 4578437 ~ 4578745 (-)
G306733 NA non-coding upstream 111564 4602712 ~ 4603305 (-)
G306732 NA non-coding upstream 112310 4603458 ~ 4605108 (-)
G306760 NA non-coding upstream 182578 4673726 ~ 4677216 (-)
G306014 NA other downstream 804745 3677874 ~ 3679488 (-)
G305772 NA other downstream 1759289 2724594 ~ 2724944 (-)
G304459 NA other downstream 3251941 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 3387315 1086404 ~ 1097333 (-)
G304369 NA other downstream 3425313 1058325 ~ 1058920 (-)
G306679 NA other upstream 5266 4496414 ~ 4505953 (-)
G306792 NA other upstream 313247 4804395 ~ 4865973 (-)
G306902 NA other upstream 662520 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location