CI01000092_05233177_05241886 (MFSD1)


Basic Information

Item Value
gene id CI01000092_05233177_05241886
gene name MFSD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 5232993 ~ 5242071 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_05233177_05241886.mRNA
ACAGATAACATTGACAAACACAAGAAAAATGATATACCATACGTTCAGGAAATGCGAAAGTTGTGATCACGTGACCCGCAGCAGCAGCTGTCACATGACTATTCGCTGTAAACATGGCAGACAGAGAGGAGTACCAGAGTCTCGTAGATGATGATGATGAAGATAATGATGATGTGTCCCGGCACATGAGCCCGCTGTGTGACCCGAGACACCTGCTGCACCGGATCGTGGTCCTGGTCTTCATGTGCTTCTTGGGCTTCGGTAGTTATTTCTGTTATGACAATCCAGCGGCTCTTCAGACTCAAGTCATACAGGACATGAGTCTGAACACGGCCTCGTTCATGCAGCTGTACGCCTGGTATTCATGGCCCAATGTCGTCCTGTGCTTCCTGGGCGGATTTCTGTTGGACCGAGTCTTCGGCATCAGGCTGGGGACTATAATCTTTGCACTGTTTGTGTTATTAGGGCAGATCATATTCGCGGCCGGTGCTCTGGCCAATCACTTCTGGCTGATGAACTTGGGCCGGTTTGTGTTCGGCATCGGTGGAGAGTCTCTGGCTGTGGCTCAGAACACGTATGCGGTCAACTGGTTTAAAGGCAAAGAGCTCAACCTCGTGTTCGGCCTGCAGCTCAGCATGGCCAGACTGGGCAGCACGGTCAACATGAACGTCATCGGTTGGGTGTACGGCCGCATTCAGTCTATGACAGGCTCAGCGGGACACACCACTCTCGGGATCACACTCATGATCGCGGCGTCCACGTGTCTGTTCTCGCTCATATGTGCTCTTGTTCTGGGCTTCCTGGACAGACGGGCAGAGAAGATACTCAACAAGGAGCAAGGCAAAACCGGGGAAGTCATCAAGCTGACAGACGTCAAGGACTTTCCCTTCTCTCTCTGGCTCATCTTCATCGTCTGTGTGGCGTATTATGTGGCCATCTTCCCGTTTATTGGACTGGGCCAAGTTTTCTTCATCGAGAAGTTCAGCTTCACTACTGTCCAGGCCAGAGCCATCAACAGTATCGTGTACATCATCTCGGCTCCTGCGTCTCCTCTGCTGGGGTTTCTGGTTGATAGGACGGGCCGAAACGTCCTGTGGGTTATGCTGGCCGTGGTCACCACGCTCCTCTCGCACATGATGCTGGCCTTCACCTTCTGGAACCCCTGGATCGCCATGTCCATTCAGAACTTGGGTCTTGCCGTCATGTCAATGGCTGCAGGAAGCATCTTGGACATCAAAGGTTACCTCTTCCTCGAGGTCTTCTTCATCGCCTGCCTGTGTTTGGCTCTGCTCGCCGTGGTGTTGCTGTATCTGTACGATTATCACAAAGAGGGAGAGCTGAACCTGTCAGCTTCAACACGCACCAGACGAGCCAAATCTGAGTGAGTAAATATAGTTCACCTCAGACAGCGGCTCCAAAACATATCTGGACATGTCAGAAAATACCGTTCGTTTGCAAGAAAAATCCTCAAACACACTGTTCAAGCAAAGCATTTGACAGAAATGAAGCGTTGATGGAACATGATGAACAGCACCTGTGGTTTCTCTGATACGAGAGGAAACTAAAAAA

Function

symbol description
mfsd1 Predicted to enable protein homodimerization activity. Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosome. Orthologous to human MFSD1 (major facilitator superfamily domain containing 1).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_05233177_05241886.mRNA True 1569 mRNA 0.51 14 5232993 5242071

Neighbor

gene id symbol gene type direction distance location
CI01000092_05147974_05169915 IQCJ coding downstream 61333 5147899 ~ 5171660 (-)
CI01000092_05043766_05046720 NA coding downstream 186273 5043486 ~ 5046720 (-)
CI01000092_05003845_05017069 SCHIP1.S, SCHIP1 coding downstream 215585 5003804 ~ 5017408 (-)
CI01000092_04997617_05000398 NA coding downstream 232321 4997332 ~ 5000672 (-)
CI01000092_04873079_04899153 SMC4 coding downstream 333840 4872851 ~ 4899153 (-)
CI01000092_05245643_05246756 GFM1 coding upstream 3572 5245643 ~ 5247648 (-)
CI01000092_05264533_05281413 MLF1 coding upstream 22446 5264517 ~ 5281413 (-)
CI01000092_05290594_05293542 P2RY13 coding upstream 48328 5290399 ~ 5293545 (-)
CI01000092_05318541_05319602 P2RY12 coding upstream 76423 5318494 ~ 5319606 (-)
CI01000092_05327812_05350768 IGSF10 coding upstream 85741 5327812 ~ 5350768 (-)
G306905 NA non-coding downstream 74151 5158137 ~ 5158842 (-)
G306878 NA non-coding downstream 272155 4960558 ~ 4960838 (-)
G306780 NA non-coding downstream 466891 4764299 ~ 4766102 (-)
G306752 NA non-coding downstream 488359 4743846 ~ 4744634 (-)
G306782 NA non-coding downstream 511171 4721585 ~ 4721822 (-)
G306902 NA other downstream 78860 5153668 ~ 5154133 (-)
G306792 NA other downstream 367020 4804395 ~ 4865973 (-)
G306679 NA other downstream 727040 4496414 ~ 4505953 (-)
G306014 NA other downstream 1553505 3677874 ~ 3679488 (-)
G305772 NA other downstream 2508049 2724594 ~ 2724944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1903604 mfsd1 non-coding NC_048588.1 CM023242.2 13057103 ~ 13068432 (-)