Gene
RNA
| Item | Value |
|---|---|
| gene id | G304218 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 777712 ~ 777947 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: RE1-silencing transcription factor A-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU345664 | True | 236 | lncRNA | 0.43 | 1 | 777712 | 777947 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000092_00579690_00648591 | COG6 | coding | downstream | 129121 | 579190 ~ 648591 (-) |
| CI01000092_00508717_00509840 | NA | coding | downstream | 267384 | 508594 ~ 510328 (-) |
| CI01000092_00506401_00508318 | NA | coding | downstream | 269188 | 505739 ~ 508524 (-) |
| CI01000092_00418628_00428488 | SLC25A15, SLC25A15A | coding | downstream | 349092 | 417822 ~ 428620 (-) |
| CI01000092_00409098_00411916 | STOML3A, STOM, STOML3B, STOML3 | coding | downstream | 365796 | 406264 ~ 411916 (-) |
| CI01000092_00847979_00851661 | LPAR6A, LPAR6 | coding | upstream | 69351 | 847298 ~ 851661 (-) |
| CI01000092_01054403_01069241 | NA | coding | upstream | 276399 | 1054346 ~ 1069241 (-) |
| CI01000092_01086701_01097333 | CLRN1 | coding | upstream | 308457 | 1086404 ~ 1097333 (-) |
| CI01000092_01099061_01100011 | GPR171 | coding | upstream | 320237 | 1098184 ~ 1100021 (-) |
| CI01000092_01110360_01113717 | NA | coding | upstream | 332332 | 1110279 ~ 1115228 (-) |
| G304091 | NA | non-coding | downstream | 213821 | 563555 ~ 563891 (-) |
| G304086 | NA | non-coding | downstream | 214315 | 557708 ~ 563397 (-) |
| G304085 | NA | non-coding | downstream | 244460 | 529353 ~ 533252 (-) |
| G304154 | NA | non-coding | downstream | 255340 | 522065 ~ 522372 (-) |
| G304152 | NA | non-coding | downstream | 257127 | 519836 ~ 520585 (-) |
| G304226 | NA | non-coding | upstream | 11859 | 789806 ~ 790021 (-) |
| G304260 | NA | non-coding | upstream | 108251 | 886198 ~ 886555 (-) |
| G304261 | NA | non-coding | upstream | 111757 | 889704 ~ 890059 (-) |
| G304264 | NA | non-coding | upstream | 115795 | 893742 ~ 894424 (-) |
| G304265 | NA | non-coding | upstream | 123253 | 901200 ~ 901632 (-) |
| G304368 | NA | other | upstream | 277357 | 1055304 ~ 1055722 (-) |
| G304369 | NA | other | upstream | 280378 | 1058325 ~ 1058920 (-) |
| G304459 | NA | other | upstream | 453953 | 1231900 ~ 1232292 (-) |
| G305772 | NA | other | upstream | 1946647 | 2724594 ~ 2724944 (-) |
