G304633


Basic Information

Item Value
gene id G304633
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2005294 ~ 2035925 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU346130
CGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACGGGATTTTCATTTTTGGGTAAACTAACCCTTTAATATCCTTGCTATTGTATTGTTATACTGAGTTTATTTTAACAAATATCCTCTGTGTAATATTGTCTGATTGAAGACACTTCATTATCAGATCCAAATCAAAGTTCATGAAATGTAAAGTATTTTAGTATTTTGAAAAAATAATAAATATTTTTGTTGACTTAACTGGTTGAGAGGGTCAAATAGAGTGTACCTGATTTTTGAGGTGGGGAAAAAAGAAAAGATATTTTGTGCTAGTGATATTTTTGGAAAATCGAAGGAAGAACCATTTTCTTGAGTCTAATGTGTACAAGTACAGAATGTTTTCTTCTTTCTGCATTATTGTTTCAAGTAAAATATTTATTTGCAGTGCAACCTTGACATTCCTTATGTACACCTCTCTACAAATAAATTGTATTTGTAATGTGTTGTATTTATAACTTTCAAGAAATATGGGAAATGGCAACATTTTTGTAAATATTTATGAACAGGAGCACCAAACAATCCGTCTTTAAAATCTGGACATCATCTGGCCCCAGAAATCTGTGAAATGTATGCTATTGCAGAGGAACAGCATTTTAAAATTAAAATTTCTGTTGATAAAATGAATGTAACACTGTCCAATGACAGCCTCATTTGCCTCCATTGAGCTTGTGTTCTCCCTGAGATCCTAAACTATTATATGTAAATATAACTGAAATACAGACAAATCATGTGAGATGAGGCAGTTCCTCTTTTCTGTGCCCGTTTATTATGTTGGCAAATAGACCACAAATCCACATCCAAACTGATGGAAATGGGTGGATTAAACCTATGGTGCTCAACCAAGGAACAAGAAGGTTGAGAACCACTGCACTAATTATATTAACCTTGACCACTTTGATATCATAAATTCAGTGATGTCTGCACTGAAATTAAAACGTATGTTAGTGTGGTAGTTTTTAGCAGATACATTAAAAGTGCATCTTGGTGCCTGCCCAACCAGGGGCCTGTTTCAATAAGGAGGTTCAACCAACTCTGCGATAAAACTTAAACTCCGAGTTGACCTACTCTGAGATGGGGAAACTGAGATTTCAGTTTAAGGACAGCTGAATTGAGTTAGTTCAATCAACTCTGAGTAGGTTGTGTAAGGCCCGTCCAGTCGGCCCAACAATGGTTTCCCTTATGGTGGGGAAGGTTTTTTGCACGTTTGGTCTTTTCAGCGTGGCTTTTATCTGACTCCATTTTATTATGACCTGAAATTTAGGTTAGAATGCCAATTGATTATTGACAATTTATATGATAATTTATCTAGATATTTGATTATTCTGTTTAACTCTTTAATCTTATTGTACTCATTCATTAGGAATCTATGTTGCATAGAGAGCCGTTTAACACAGATCTCATGATCACAAACTCGCCAGTCTGATCATTAGTCAAAGGTTATGGCTAAAGCAATTTAACAAATCTGCCCATGCTTGCTATTGTTAAAAGGTACCCATGTAGCCCCCTATAGTTAATAAGATAACTATATAACAACTTGAATAAAGTTGAGACAGTAACCAGAGGTTATGGCTAAAGCAATTTAACAGTGCCGCCCATGCTTGCTATTGTTAAAAAGTAACCCATGTAGCCCCCTATAAGCCTTCACTTAATCTACTTGAGTCAATAATTCCAGAGTAAGCCAGAATAAATCCAAATGTAACAATTTATTATTAGTCAGGTAAATGTATCATGCCAATTACATAATTCAAAGATAATCGATACAAAACATAAAATGCTCAGAAACAGAGTAAAAGATGTACCTGACATCCGGAAAATACATAACGCTGAGTGTCTGGAAGACACTACGTTATGGACTGATCTGGCTACAGAATCGCACCTTGAGCCTCCTGCAACATCTCTTTAAATATTCAGACCAAGACAGAAACTTTTTTTCAAATGGAAACATGAGTTCACAAAGAACTTTCTCTGATATTTGTACTTGAAATAAGACAAATACTCAGTAAGAAAAACATTTTTGCAGCATGAATTAATGAATGAAGTATCTAAACATTGCTTGCGCTTTAAGAAAACCTGCTCCTGACTAGGTTAGGTTCACAGAGTAAGTTACCATGGTACTCTGAGTATAGGTTGCCTCCCTTTCAGAAACGGGCTTGACTTACCCTGCTTTCTTGGGTTTGATATACCTCCCATTCTGAAACGGAAAACTCAGTTTTTCTCATTTCAGGATTAACATACTTAGAGTTTTCACTTAACCTCCTTTCTGAAACGGGCCCCAGTACACTTGTGGCATTTACAAAGTTAAAAAGTAGTGTTTGAATTAAACTAGCGGTTTGAGTTAAAAATATTGAAATTATTATTGTTGGTGCAGTGTGAGGGTGATCCAGAGGGGACAGTGAGTTGACTCTGCTGAGGCAAACAAATCCACTTCTGCTCGGCCGTACCTCTGCCATATGAACTCCTCCACATCCGGATGGAGTCTCCATTTCCTGGGCCTCAGCCCCTGCCCTGAGATGATGTCTGCTCCCATATTTGAGTGTCCAGGGATGTAAACTGCCTTCAGGGAGAGGAATTTGTCCTTGGCCCAGAGCAGGATCTGCTGCGCCATCGAATGCAGATCACCCTGGTCATTTATATAAGAGACTACCGTTGTGTTGTCCGTCCATACCAACAAATGATGGGAGGATGTCCAGGAGAATGTGTTTCAGAGTAAGAAACACAGCCCTTATCTCTGGGGAATTTATGTGCCACAAGAGAAGTGGTATGGGGGGATTTTTGTTCCAAAATTCCAAATAAATAGATTATGATCCACAAATAAATGTAAAGAGATTCACAAAAAAATAATTGTGTGCACAAATGAATAGAATGAGATCCACAAATATATGTTAGGAGTTTCACAAAAATGAATTAAATTCACAAATATATAAAATGATGTATGCCCTGGAGTCGCAAAGGTCCTAGAGCTGTGACCATGTACTCTGTGAAGGTGTGAGGTGAAGGGAAGAACTCAATATAGCAAATCTGAGAAACTTCCTGTGTTCAGACAAAATCATGATATGATAATATGCATGCTTCAGATCTATCGTGACAAACTAATTCTAAGAATGAATTGGAGACATAATAAGCAGGTCCACATCTGGATTGGAAGAAATCATAGCTTTCAAATCCAGAATGCGACCCTTGGAGTCAGTAGAAAGAGCAAAGAGAAAGGGCAATGCCCGTCTCAGACTCGTCTACTAGCTCCATCTGCGAGCCCTATGATCTGAGTTGCCGTGCTTTCTCAGTAGCAGAACCCGAACCACGAGGTGCAGATGCCAGGCTCCCATCTTTAGTCAGCTGTCCACAACAGGCCTAAACCAACCATGTTACCAGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU346130 True 3404 lncRNA 0.38 2 2005294 2035925

Neighbor

gene id symbol gene type direction distance location
CI01000092_01989763_02003920 PGM2L1 coding upstream 1164 1989763 ~ 2004130 (+)
CI01000092_01985290_01986640 NA coding upstream 18607 1985290 ~ 1986687 (+)
CI01000092_01962495_01963651 NA coding upstream 41407 1962495 ~ 1963887 (+)
CI01000092_01912280_01944807 ABCG1 coding upstream 60077 1912280 ~ 1945217 (+)
CI01000092_01889654_01894899 NA coding upstream 110206 1889654 ~ 1895088 (+)
CI01000092_02186791_02187942 NA coding downstream 150866 2186791 ~ 2187942 (+)
CI01000092_02279826_02285934 NA coding downstream 240587 2276512 ~ 2286079 (+)
CI01000092_02358901_02363225 NA coding downstream 321978 2357903 ~ 2364462 (+)
CI01000092_02395791_02407508 NA coding downstream 359676 2395601 ~ 2407642 (+)
CI01000092_02411552_02412283 NA coding downstream 375627 2411552 ~ 2413511 (+)
G304672 NA non-coding upstream 45763 1959255 ~ 1959531 (+)
G304671 NA non-coding upstream 51467 1953098 ~ 1953827 (+)
G304635 NA non-coding upstream 105821 1899176 ~ 1899473 (+)
G304662 NA non-coding upstream 138985 1866080 ~ 1866309 (+)
G304661 NA non-coding upstream 139390 1865503 ~ 1865904 (+)
G304687 NA non-coding downstream 5603 2041528 ~ 2041832 (+)
G304690 NA non-coding downstream 10456 2046381 ~ 2046624 (+)
G304694 NA non-coding downstream 18564 2054489 ~ 2054712 (+)
G304700 NA non-coding downstream 38406 2074331 ~ 2074605 (+)
G304686 NA non-coding downstream 43522 2079447 ~ 2079740 (+)
G303768 NA other upstream 688771 1315443 ~ 1316523 (+)
G304938 NA other downstream 281867 2317792 ~ 2318234 (+)
G305584 NA other downstream 1631383 3667308 ~ 3667965 (+)
G305596 NA other downstream 1690422 3726347 ~ 3863135 (+)

Expression


Co-expression Network