G306014


Basic Information

Item Value
gene id G306014
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3677874 ~ 3679488 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU347691
ACTTTGGTCGAGCGGAAGTCGACCTATTTGCTTCAGGGGAATCAACCCAGTGTCCACTGTGGTTCTCCCTATCTCATCCAGCACCATTGGGTCTGGATGCCATGGTATAGACGTGGCCGAGGCTGCGTCTGTATGCATTTCCCCGTTCGCTCTGCTCCAGGGAGTTCTGGAGAAAGTACGCCAGGAAGGGGTCAGTCTAATATTGATACACCCATACTGGCCAACCAAAATATGGTTCTCAGACCTACTGTCACTTCTAGATGGCTCCCTGATGGAGCTTCCTCTCAGGCAGGACCTCCTGTCTCAAGCGGGCGGCATGATAATTCATCCACGCCCAGAACTACGGAGACTGTGGGCCTGGCCTCTGAGGGGGCCAGGCTCATAGATGCTGGTCTCCCAACTGAGGTTGTGGAGACCATACTCCACTCCAGAGCTCCCTCCACGAGGAAGTTGTATGCGTATAAATGAAAACTGTTCTCTACTTGGTGTAGACAAAGCAATGTGGACCCTGTCCACTCTTCTATTAGCCTTGTGCTTCAATTTCTCCAAGACAATTTCTCTGATGTTTTTATCCCCTTCAACCTTGAAGGTTTATGTTGCGACCATTTCGGCCATGCTCCTCTGGGGGATTCCTCGGTAGGTCGAGACCCCCCTTTTTTATACGCTTCCTCCGTGGTACTCTGAGGCCTTCAGTACGTACAAGGACTCCGGCCTGGGATTTGGCCGTGGTATTAGAAGGGTTAGCTAAGGCTCCCTTCGAACCACTAGAGGAAGTTTCAGAGAAACTCCTCACCCTAAATACCATATTTCTACTGGCTATTTCATCTCTTAAAGGAATAGGAGATCTTCAAGCACTTTCAGTTGCTCCTTTGTGTTTGGAATTCGCACCTGGAATGGTCAAAGCGTTCCTGCACACTAGACCAGGCTATGTGCCTAGGTCTCCACCAATGTCCCGGGTCCCATCGTACTTCAGGCCTTCTATCCTCCTACATTTACAACTTCGGATCAGGAGAAACTCAATCTGCTCTGCCCAGTGAGGGCTTTAGATGCATATGTCCACAGAGCTGCCCTGTGGCGTAAAAAAGATCAATTGTTTGTGTGTTACAGGTCTCCTAAGAAAGGAGGCCCAACATCTAAGCAGAGAATGAGGAAGTGGGTGGTCGAGGCTATCTCACTTGCTTATGAGGCGGCCGGACAACCATCTCCATTAGCTGTCCGTGTCCACTCTACTAGGGGTATGGCTGCCTCAAAGGCAGGAGTATCCATTAATGACACATGTGATTCAGCTGGATGGTCATCCCAGCACACATTTATTAGGTTTTATAACCTGGATATAGGCTCCACTCCGGGGTCGTCAGTTCTGTCTACAAGATAACAGACAGGTACTTGGTTCTACGGCGTAGTTGGGACAGTGTTCCCATAACGTCATATGACGTAGCGTCGACAGTTCCCATGAAAGGGAACGTCTCGGGTTACTTGTGTAACCCTGGTTCCCTGAATAGGGAACGAGACGCTACGTCGCGTTGCCGTATCCCTGGCATACCTGTGAGCGTGTTGCTTCAGCCATAATCCAGAAGCTAGCGTTCTTTGTTCTGGGTATGCTTTATAGTTTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU347691 True 1615 TUCP 0.50 1 3677874 3679488

Neighbor

gene id symbol gene type direction distance location
CI01000092_03652598_03660979 ECH1 coding downstream 16770 3652598 ~ 3661104 (-)
CI01000092_03630767_03645397 PRSS16 coding downstream 31718 3630626 ~ 3646156 (-)
CI01000092_03614992_03615400 NA coding downstream 60891 3614437 ~ 3616983 (-)
CI01000092_03600064_03611514 MEIS3 coding downstream 65726 3599914 ~ 3612148 (-)
CI01000092_03418301_03428309 ATM coding downstream 249565 3418301 ~ 3428309 (-)
CI01000092_03682820_03688497 NA coding upstream 2926 3682263 ~ 3688531 (-)
CI01000092_03702024_03712418 NA coding upstream 21458 3700946 ~ 3712418 (-)
CI01000092_03733899_03743505 NA coding upstream 53469 3732957 ~ 3743557 (-)
CI01000092_03750015_03753913 CYP2Y3 coding upstream 69752 3749240 ~ 3753976 (-)
CI01000092_03762168_03785262 NA coding upstream 81332 3760820 ~ 3785407 (-)
G306010 NA non-coding downstream 106 3676767 ~ 3677768 (-)
G306017 NA non-coding downstream 3440 3671445 ~ 3674434 (-)
G305810 NA non-coding downstream 79145 3597328 ~ 3598729 (-)
G306053 NA non-coding downstream 86895 3590733 ~ 3590979 (-)
G306051 NA non-coding downstream 90765 3586867 ~ 3587109 (-)
G306083 NA non-coding upstream 45539 3725027 ~ 3725677 (-)
G306089 NA non-coding upstream 62992 3742480 ~ 3743248 (-)
G306120 NA non-coding upstream 335297 4014785 ~ 4015061 (-)
G306121 NA non-coding upstream 346276 4025764 ~ 4026076 (-)
G305772 NA other downstream 952930 2724594 ~ 2724944 (-)
G304459 NA other downstream 2445582 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2580956 1086404 ~ 1097333 (-)
G304369 NA other downstream 2618954 1058325 ~ 1058920 (-)
G304368 NA other downstream 2622152 1055304 ~ 1055722 (-)
G306679 NA other upstream 816926 4496414 ~ 4505953 (-)
G306792 NA other upstream 1124907 4804395 ~ 4865973 (-)
G306902 NA other upstream 1474180 5153668 ~ 5154133 (-)

Expression


Co-expression Network