CI01000093_00021721_00029528 (SAMSN1A)


Basic Information

Item Value
gene id CI01000093_00021721_00029528
gene name SAMSN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 21721 ~ 29528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000093_00021721_00029528.mRNA
ATGATGTATGCCATTGGGCAACAGCCACATAAACAGGAGAATTACTGTATTTCTGCTGAGGGGTCAAGGGTCATGGAGACCGCACACTCCAGCAGACATCGATGGAGTAACCCCACAGAAATGGCTGTAAACTGGGCACAAGCCTACAACACCTGTCAACCTCCCCACAATGAACATTGTGTACACACCCGTGACTGCAGAATGCCAAGTCAAGGAGATAAAATCAACGTTCAAAACATGAAGAGAGACTCCTTGCCTAAAGGAGTGGTGCGTTCCACAACCAGTGTGGATTTCTGTACCTCCAATCGATCCACAAGTTTTGGGAGATTTGACACATTCAGAAATCAACACTCCCCTTCCAGACTTGAGGAAAATGGAACACCTGAGACAGATGAATCAACAGCAGAGAACTGTGAGAAACCGGGAAGTTTGGGAAAAAAGATGAAGGCCATCTCAATGACTATGCGTAAAAGGATGGGCAAGAAACACGTCAAATCCTACTCTGAGGACATGGGTGATGACACTGAAGGAGAAACAGAGAATGCGACTCCAGCAGAGAAGAGCTCAGACCACGCCAGCAACTCATTAGAAAGCCTCTACAGTGGACAGAGCTCATCCAGTGGTGTTACCAGTAATTCAGATGTATCCAGTAACAGAGACAGCCTGAAACTGGAGGAGGAAATGGCCTACACGGGGCAGTTCTGCGGGCGAGCAAAAGTACATACAGACTTTGTTCCCAGCCCATATGATACAGACTCCCTCAAACTGAAGGTGGGAGACATCATCAGCATCATAAGTAAACCACCTATGGGAATATGGACCGGAATGCTCAATAATAAAGTGGGAAATTTCAAGTTTATTTATGTGGATGTTCTTCCTGAGAAAGAAAAGGAGGAAGAGGATGAGGCCCCAAAAATAAGACCTGTGAAAGTATGCAAGAAGCCACGACCAAATACACTTCTGGAGTTATTAGAGAGACTTCATTTAGAGGAATATGCATCTTCTTTACTCTTGAATGGCTACCAGACAGTAGATGACCTCAAACACTTGAAAGAGAGGCATTTGATTGAGCTGAATGTGACTGATCCAGAACACAGACGCAAGTTGCTTGCTGCATCAGACTGCCTCTATGTCACAAGCA

Function

symbol description
samsn1a Is expressed in blood; macrophage; and solid lens vesicle. Orthologous to human SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1).

NR:

description
SAM domain, SH3 domain and nuclear localisation signals, 1b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000093_00021721_00029528.mRNA True 1141 mRNA 0.45 7 21721 29528

Neighbor

gene id symbol gene type direction distance location
CI01000093_00000644_00001222 NA coding downstream 20499 469 ~ 1222 (-)
CI01000093_00044285_00045637 NA coding upstream 14488 44014 ~ 45719 (-)
CI01000093_00224221_00233968 NA coding upstream 194337 223865 ~ 236442 (-)
CI01000093_00372074_00372877 NA coding upstream 342267 371795 ~ 373025 (-)
CI01000093_00441786_00443029 NA coding upstream 411840 441368 ~ 443590 (-)
CI01000093_00601248_00607534 NA coding upstream 571557 601085 ~ 607729 (-)
G307432 NA non-coding downstream 6416 13323 ~ 15305 (-)
G307449 NA non-coding upstream 33522 63050 ~ 63306 (-)
G307486 NA non-coding upstream 101776 131304 ~ 131571 (-)
G307487 NA non-coding upstream 102060 131588 ~ 131815 (-)
G307488 NA non-coding upstream 102403 131931 ~ 132275 (-)
CI01000093_01042275_01068202 NA other upstream 1038491 1041650 ~ 1068202 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location