Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

economic fish

G307490

Basic Information

Item	Value
gene id	G307490
gene name	NA
gene type	non-coding
species	grasscarp (Ctenopharyngodon idella)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	CI01000093
NCBI id	null
chromosome length	1475560
location	135430 ~ 135668 (-)
genome version	v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU349385
TTACTATTTATGTATAACATACTGTATTTATTTACACTGCCAGAGACTTATTCACCAGACGGTGTTAGGAAATGCCACACCGATACTGATTCTCGTTTTATTTCTCCTCTTGTCCAAAACTCTTCTTGGGTCATTTGATTCACCCGTACGTTTACATTTCTTGGAGTTATCTTTGGCGACAGAACCTGCTCCAAAGGATAACAAATAATTGTGGTCCATGACGATGACTGTGTGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU349385	True	239	lncRNA	0.38	1	135430	135668

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
CI01000093_00044285_00045637	NA	coding	downstream	89778	44014 ~ 45719 (-)
CI01000093_00021721_00029528	SAMSN1A	coding	downstream	105902	21721 ~ 29528 (-)
CI01000093_00000644_00001222	NA	coding	downstream	134208	469 ~ 1222 (-)
CI01000093_00224221_00233968	NA	coding	upstream	88197	223865 ~ 236442 (-)
CI01000093_00372074_00372877	NA	coding	upstream	236127	371795 ~ 373025 (-)
CI01000093_00441786_00443029	NA	coding	upstream	305700	441368 ~ 443590 (-)
CI01000093_00601248_00607534	NA	coding	upstream	465417	601085 ~ 607729 (-)
CI01000093_00633602_00642455	NA	coding	upstream	495958	631626 ~ 642522 (-)
G307488	NA	non-coding	downstream	3155	131931 ~ 132275 (-)
G307487	NA	non-coding	downstream	3615	131588 ~ 131815 (-)
G307486	NA	non-coding	downstream	3859	131304 ~ 131571 (-)
G307449	NA	non-coding	downstream	72124	63050 ~ 63306 (-)
G307494	NA	non-coding	upstream	4434	140102 ~ 140431 (-)
G307499	NA	non-coding	upstream	10766	146434 ~ 156389 (-)
G307518	NA	non-coding	upstream	49606	185274 ~ 185571 (-)
G307519	NA	non-coding	upstream	50046	185714 ~ 185948 (-)
G307521	NA	non-coding	upstream	53637	189305 ~ 189544 (-)
CI01000093_01042275_01068202	NA	other	upstream	932351	1041650 ~ 1068202 (-)

Expression

Co-expression Network