G307499


Basic Information

Item Value
gene id G307499
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 146434 ~ 156389 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU349404
CTGTCCAAGCCATCTGTCTATTTTTTAGAATTCGTCTGGTGGAGCAAGTGTCTGCTGCTGGGACAAGTCCAGCATGCCAAAACGGATTTCACCACAGCATTTAGCCAGAAATACAAATATTTCAATTAAAAAATTAAGATGCATCAACTGTATTACTAAAAACATTGGAATATGTAATGATTTCTCTTTCTTTCTGTCTGTGCGTCTCCCTCATTTGAAAGAAACCCGTGGTGTTCTGACAGTCCAAGAAAGTGAATTTTACAGAGGTAAGCATGTTTTTTTCATAGACTCTGTACTTCTTTAAAAAGATTCACCATCATCAATCATCAACCTCTCATAATATTACTTTCTTAAATAGAAAATCGACTAATTAAAACAGCACATAATACATCCAGTGTGAGAAATTTAAGGATTAATATAAAAAAAAGGCAAAAACTCTAACCAAAATTGCCAAGAATGCGATTAAGAAGTCTGTGCTTTAGCCGGCGACGTTTTTCACCAAAACACAATATCTGGAACATATCCAACAGCATTTGACCTTCACGCTCATCCTAAAAAATTTTGAATTACTGAAACCAGACCTGTCAAAGCAATAGCCGAAATAACGCTTCGCTTTAAAAAAAAAAAAAATGTAATAAATAATAGAGCTATGTTACGCAGTCATGTGACATATTCTATCCTTCATTTCTCCCTTTTCTGGTGAGCAGCCCAGGCACGTATCATTAGAGCGTTAAAAGAAGCGCGGCTGGTGCCGTGGGTCTCCTCCTGTGCTGCCTTCCCTCTAAACGTGTGACTCTGGCTGGCTGAGAGCATGAGAACGGAGCCTTTTGAATAGCAGGATCCTCATACTTGGCTAGTAACCATGGAAGCAGATGCCTACTCTCTTTGCCCTCCTTACCTCCTTGCTCCCTCATTGAAAAGAGGGCACGCCTCGCTTTCTTCTTCCTGACCGAACTTGCCTGGCCCTCAGAGGAAGCGATTGAGCAGGTCACTGGTCTAGACTTGTTTGCATGGTCCACGGAACAGCCTTGAGGTAACCCTTGCTCCCCGTGCGTCGCACCACCGTACACTGCAGGGGGGGACATCGGAGATGTGAATTTGAAAAGGAGCTCCGTCCGATTTTGCCTTTGTGCCTTTTTTTCCCTCATCGATCGGCTGAATATCGAACCCTCAGTCTGTGCATGTGTGAAACGGATAGCTTAGTAAGCATTTTTTCTAATCAAGCTTGCGTTGTGGGCCAACTCTCTCGTTTTTCTCTCTCGTACTTAGCCGCCTCGAACCCTCCCTCTCTCTCTGTCCCTCTTTCTCCATTTTTCTCTCTCTCTCTCTTTTCCTCTCTTGCTCTTTCTGCTTTTTCTTCCTGTTCTACGCTCCTCTAAGCATTGTTTTGATTATCTGGGACATTTGGATAAGCATGTTGTGATACTTCTAATCAGTGTCAGTTTTTTTAATCTGTTATTGAGTGATTTCAGCTTTGTGTTACCCGTGGATTTTGCATGTACAACTGTTTGCTTTTTCAATTTCAACTGGGATGACCACTAACCACAGAGGGACTTTTTAGACTATTTAAACAAAAACACTGGCAAATCCACTGCTTTTGTTTCCATTCCATCTTAAAAGATGTATGGATGACAGTTTCTCCTTTTAAAAAACATAACAATTTTCATGTGAAAAACTGATGTCTCATGAGACCAACAACAAAAAAGTGGAGAGAGTTTGAGCAGAGGACGACTGACCCGAAGGCACGGTGACTTGGAGAAAAGGCTGGTATCACACTGGGAGAAAAAAAAAGCGAAAGGGAGAGAGATGGGGTTCATTCTGTCTTTTCTCCCGCTCTCTCTCTCTCCCTTTCTCCTGCTGCCTTTGTGTGCCGTGCAGGAATGTGCTTGCTTTTCATTTCTTTCTTTGTGTCTGCCCCTCAGGCCCTAGCAGGCAGTGTCTTATGCCACAGCGGGGTCATGGCAAACACAGAGACACATTCATGGCCGCATCAAGTTTATGTGAGAATCTGGTCTTTCCTTGCCCCTCATTTCCATATGAATTGTTAATAAAATAGCAGTCATGTGAAGGGGAGATCACTCCAGCAGGGGAAGTCAAGCAAAGCAACCTTGGTTTTAAAACGGCCTCATCCCTTCTGTTCCTTCGATGCAGAAACGCTCCGGTTAAAGCTATCACGAGCATATGTCATCATTATTGTCCATGTTTACTTTAGCACAACCACATGTGAAATGCTCCTTCACAAAACAACAGCGGAAACTCTGTATTTGGATTAATGGCTCAATGAAAATAACATGTCTAAATAATCAATTTTGAGAAATAACCATATAAAATTCCATGTTTTGTTGGGTGTAACAATTACAGCGATATCCTACTGGAGTTTCTCACATATGCATTAAAGGCAAGACTCTTCGTTTTAAAATTTTAGCCAGCAATAAAACAAAATGGAGCTTGGGAAAAACAGATCCCCATTTTTAGTTTGCTGTTCTCAAGCCAATCACAGTTTGGGCCTTCTGGACAGGGAGCAGGATACATCTTGAAGGGCTGGCCAGTTGATTGACTTTTCTTTGGGTTCAACACACGTGTCCTGTGACCCCGCCACACTTTCCCATGCCCTCCGATGCCCCATCTATTCTAACAGACATCCCAAATTCCCCCCATCCTCCACAGACAGATCAGCTTCAGCCATCACTTGACAGCAGCCATGTGTACGACTTCCCTCTGTGATGTCATAGAGGTTTGCTGTCCAATAATTAGAGGGCGAGGAAGGGTCAGGATAGAAAGAAGGGTGGTGATTGGACAAGATAAAGGAGCTCACCAAATCAACCTGCTCCGACTGCTTTTTATTCCGCACACGTGACGTTTCATTAAATGTGCAGTAAAGAGAAGTAACTGAAATAATATCATCGAGCAAAACATTTACACATGAATGTTAACCTGGAGGGGGGAAAGTATTGTTCATATACGATAAAATCTGTTTTCCATTATACTAAGGTTATATACTGAAGTTATTTATTTAATAAAACAAATTTTGTTGTTGATCTTTTTTTTTTTTTTTTTTTTTACATTATAATAACAATACAACTAATTATCAGTATTTTACAATAGTTATTTAAAATATATTTTCTTATTAATATTACTCAGAATCATAAATGATTATACATAATATATTTCATATAAATTAATATCATTAAAAGTAATTATATGTAAAATGACAAAATTCTTTATATTTCTCTTTTAGTCAGAGATTACATCAGACCCTGGACCACAAAACCAGTCATAAGGGTCAATTTTTTTAAATTTAGATTTATACATCTGAATAAATAAGCTTTCCATTGATGTATGGTTTGTTAGGATAGGACAATATTTGGCTAAGATACACTATTTGAAAATTTGAAATCTGAGAGTGCAAAAAAATCTAAATATTGAGAAAGTCGCCTTTAAAGTTATCCAAATGAAGTCCTTAGCAATGCATATCCACTCACAAAAATACATTTTTGATATATTTACGGTAGGAAATTTACAAAATATCTTTGGCATAAAAGAAAAATAGATAATTTTGACTAATATTGTCCTATCCTAACAAACCATATATAAATGGAAAGCTTATTCATTCAGCTTTCAGATGATTTATAAATCTCAATTTCAAAAAATTGACCCTTATGACTGGTTTTGTTGTCCAGGATCACAAATGTTGCCAACACAACTGATGTTTATAACTTAATCTAGATGTCACACACACACACACACACACACACACACACACATACATATATATATATATAATACTTGGGTTATAATTATTGTACATTTTACAAGAAACTATTTCAGTCTTTATTAAAAATTGTATGTATGTTTAATTTGCCTTTTCTTTGTAATTAATTGTGAAAATTGTTAATCACACTATTTTTCCAGCGTATTCATATGTTAAGTTGAATACTGAATATACATAGATAAAAAACTACAACATTCTTTGACACGTCTTGATTAAATCCTATAAATCTCCATTTCACAGGATGTCAAATCTCATAATCTCCATCTTAATAACTTGTGTTATCATCTCTAACATGTATCTGAATGGCTCTTCTTCTGCTCAATCCTGTTTTGTGGTTCTGTACATCTGCTATTCTTACAGCACTCTGCTCGTGATTAAGTCGTCTCTTTGTGGACATGGATGTCCTCACTCTTCAGTGTTTTTGGACTTGCGGACAGATCTTGCTGTGAATCGACGGTATGTCTGCCAGCTTGACACACACAGAAGGAGAGCATGACATCAGGGCTTTGTCATTTAGAAGATCTATTCAAGGATTACAGTGGAGAATGAGCCCCTGCCTGGAGGAGACTTATTTCACTGAAACCCTAGCTGTTTTCACTACAATTTTTTTTTCTCCAAGTACTTCTGGAAGTACGTAGCTTGGGAGAGTACTATAGTTGGCATTACGTATTTAAATCTGAGACTTTTAACCCTTAGGCGCCACTTCGGAACACAAAAGAGGATGTGTGCCCGCATTAATAATATCACATGAGCCTCCCACCCAAATATTATAAAAATGACAAACAATGATACAATAAACTGTTTGTAGGAATAGCTAAGATTAATTAAAAAAATTCAAGTCTTAATTCTTGGCTATGAAACAGATAAAGTAGACCAGATAATGTATTACTTTTATATATCACTCTTAAACATAAAGGTTCCAATTGCAAGCAACATTTTAATAGATAGATAGATAGATAGATAGATAAAAAAAACTCAAAAAGTTCTTTCTGTCATGAAAACCTTCTGTAGATGTCAGAAGTTTACAAGAATTTCTTTTTTATTGCAGTATTGCAGAAATAAATGGTTGTTTTGGCAGACAGAATATCACATATCAAAATCATGCTAAATGGTTTATATATTTTCATGGCAAAAACACACTGACTCGAATGGTGGCGAGTCTGACATTACTTGCTGTTTGCTGAACCCGAGTTCAAACTCTCTCGCTCTCTCTGCAACACAGCAGAAGACATTTCCTGTGGATATCAGTGAGCCATTCAACTCACATACTGCTTCTTTTGTCTTGTCATTTCCCCAAACAAGTGTCCTGTGATTTTGGAAAAAAAACATTTTGGAAATGTAATGCTTTCTTTGTACTCATCACAGGTGTTTGTACAGCTTACTTGTAAAGGAGACGATAACATAAGCAGAAGCATGTTTGGGCAATTCCAAGTTAAAAATCATGTTTCAGTTTGACTGGGATATCAGTCAGCAAGATATACAAAAAAAAAAAAATGAACATGCCAGGAATTAATTTTGAACTGGCTCTGATTCACACGGTCATTTTGAGTGAATTTTTATGTAATAATAATTTAAAACTGATTTCTAAATTTACAAGGAAAGCCTCTTCTTCCCAGCAGGCATCAGGATTTCCTAATTTTACACATGAATCTAGAATTCAAATAATTTACAATAAATTTACTTGTACAATCAAAGACATTAAGGCTGTCAGGTTAAAATTTTCACTTATTTTCACAGTCAGGTTAAAAAAAAAAAAAAATACAAAAGCACCATAAATGTGGCTCTCAAATCTCCATCACAATAAAAAATGTCAAAATATGCTACCTCCTTGAGTCAGGTTTGTAAAAGACCAAATGCATTTTAACCAACTGCAACTTACCAAGTTTGAATGCATCTTTTTGAATGAGATTTGAAAGCCAGTTCGGAGAGGATGATATTAACTTTACACTATCATATAGCTATAGAAGCCTTAGAATATAGTGCAAAAGGTGGACTTTTATTGAATTATTTTAGAAATCAATTTTTGTATTTAATGTATTTATTAAACATGAGGCTAAATGTAATTTGTTATGCAGTGTTTGGTGGTAAGTGTTGGGTTATGAGCTCAAACATATTAATATAATAACATAATGTAAATTATAGTGTAATATAATGCATAATTAGGGTTGGGTATCACTTGAATTTTAACGATTCCGGTTCCGATTCTGCTCATCGATTTACAATTTCCATTCCAATAAGGTAAAAAAAAAAAAACTTAAAAGTCTTACTGCAAAACATTTCATTGTAGCTGAACACCATGAACAAAAATCAACAGGCT
>TU349400
AGCAAGTGTCTGCTGCTGGGACAAGTCCAGCATGCCAAAACGGATTTCACCACAGCATTTAGCCAGAAATACAAATATTTCAATTAAAAAATTAAGATGCATCAACTGTATTACTAAAAACATTGGAATATGTAATGATTTCTCTTTCTTTCTGTCTGTGCGTCTCCCTCATTTGAAAGAAACCCGTGGTGTTCTGACAGTCCAAGAAAGTGAATTTTACAGAGCCCAGGCACGTATCATTAGAGCGTTAAAAGAAGCGCGGCTGGTGCCGTGGGTCTCCTCCTGTGCTGCCTTCCCTCTAAACGTGTGACTCTGGCTGGCTGAGAGCATGAGAACGGAGCCTTTTGAATAGCAGGATCCTCATACTTGGCTAGTAACCATGGAAGCAGATGCCTACTCTCTTTGCCCTCCTTACCTCCTTGCTCCCTCATTGAAAAGAGGGCACGCCTCGCTTTCTTCTTCCTGACCGAACTTGCCTGGCCCTCAGAGGAAGCGATTGAGCAGGTCACTGGTCTAGACTTGTTTGCATGGTCCACGGAACAGCCTTGAGGTAACCCTTGCTCCCCGTGCGTCGCACCACCGTACACTGCAGGGGGGGACATCGGAGATGTGAATTTGAAAAGGAGCTCCGTCCGATTTTGCCTTTGTGCCTTTTTTTCCCTCATCGATCGGCTGAATATCGAACCCTCAGTCTGTGCATGTGTGAAACGGATAGCTTAGTAAGCATTTTTTCTAATCAAGCTTGCGTTGTGGGCCAACTCTCTCGTTTTTCTCTCTCGTACTTAGCCGCCTCGAACCCTCCCTCTCTCTCTGTCCCTCTTTCTCCATTTTTCTCTCTCTCTCTCTTTTCCTCTCTTGCTCTTTCTGCTTTTTCTTCCTGTTCTACGCTCCTCTAAGCATTGTTTTGATTATCTGGGACATTTGGATAAGCATGTTGTGATACTTCTAATCAGTGTCAGTTTTTTTAATCTGTTATTGAGTGATTTCAGCTTTGTGTTACCCGTGGATTTTGCATGTACAACTGTTTGCTTTTTCAATTTCAACTGGGATGACCACTAACCACAGAGGGACTTTTTAGACTATTTAAACAAAAACACTGGCAAATCCACTGCTTTTGTTTCCATTCCATCTTAAAAGATGTATGGATGACAGTTTCTCCTTTTAAAAAACATAACAATTTTCATGTGAAAAACTGATGTCTCATGAGACCAACAACAAAAAAGTGGAGAGAGTTTGAGCAGAGGACGACTGACCCGAAGGCACGGTGACTTGGAGAAAAGGCTGGTATCACACTGGGAGAAAAAAAAAGCGAAAGGGAGAGAGATGGGGTTCATTCTGTCTTTTCTCCCGCTCTCTCTCTCTCCCTTTCTCCTGCTGCCTTTGTGTGCCGTGCAGGAATGTGCTTGCTTTTCATTTCTTTCTTTGTGTCTGCCCCTCAGGCCCTAGCAGGCAGTGTCTTATGCCACAGCGGGGTCATGGCAAACACAGAGACACATTCATGGCCGCATCAAGTTTATGTGAGAATCTGGTCTTTCCTTGCCCCTCATTTCCATATGAATTGTTAATAAAATAGCAGTCATGTGAAGGGGAGATCACTCCAGCAGGGGAAGTCAAGCAAAGCAACCTTGGTTTTAAAACGGCCTCATCCCTTCTGTTCCTTCGATGCAGAAACGCTCCGGTTAAAGCTATCACGAGCATATGTCATCATTATTGTCCATGTTTACTTTAGCACAACCACATGTGAAATGCTCCTTCACAAAACAACAGCGGAAACTCTGTATTTGGATTAATGGCTCAATGAAAATAACATGTCTAAATAATCAATTTTGAGAAATAACCATATAAAATTCCATGTTTTGTTGGGTGTAACAATTACAGCGATATCCTACTGGAGTTTCTCACATATGCATTAAAGGCAAGACTCTTCGTTTTAAAATTTTAGCCAGCAATAAAACAAAATGGAGCTTGGGAAAAACAGATCCCCATTTTTAGTTTGCTGTTCTCAAGCCAATCACAGTTTGGGCCTTCTGGACAGGGAGCAGGATACATCTTGAAGGGCTGGCCAGTTGATTGACTTTTCTTTGGGTTCAACACACGTGTCCTGTGACCCCGCCACACTTTCCCATGCCCTCCGATGCCCCATCTATTCTAACAGACATCCCAAATTCCCCCCATCCTCCACAGACAGATCAGCTTCAGCCATCACTTGACAGCAGCCATGTGTACGACTTCCCTCTGTGATGTCATAGAGGTTTGCTGTCCAATAATTAGAGGGCGAGGAAGGGTCAGGATAGAAAGAAGGGTGGTGATTGGACAAGATAAAGGAGCTCACCAAATCAACCTGCTCCGACTGCTTTTTATTCCGCACACGTGACGTTTCATTAAATGTGCAGTAAAGAGAAGTAACTGAAATAATATCATCGAGCAAAACATTTACACATGAATGTTAACCTGGAGGGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU349404 False 6089 lncRNA 0.37 2 146434 156389
TU349400 True 2462 lncRNA 0.44 3 149578 156347

Neighbor

gene id symbol gene type direction distance location
CI01000093_00044285_00045637 NA coding downstream 100782 44014 ~ 45719 (-)
CI01000093_00021721_00029528 SAMSN1A coding downstream 116906 21721 ~ 29528 (-)
CI01000093_00000644_00001222 NA coding downstream 145212 469 ~ 1222 (-)
CI01000093_00224221_00233968 NA coding upstream 67476 223865 ~ 236442 (-)
CI01000093_00372074_00372877 NA coding upstream 215406 371795 ~ 373025 (-)
CI01000093_00441786_00443029 NA coding upstream 284979 441368 ~ 443590 (-)
CI01000093_00601248_00607534 NA coding upstream 444696 601085 ~ 607729 (-)
CI01000093_00633602_00642455 NA coding upstream 475237 631626 ~ 642522 (-)
G307494 NA non-coding downstream 6003 140102 ~ 140431 (-)
G307490 NA non-coding downstream 10766 135430 ~ 135668 (-)
G307488 NA non-coding downstream 14159 131931 ~ 132275 (-)
G307487 NA non-coding downstream 14619 131588 ~ 131815 (-)
G307486 NA non-coding downstream 14863 131304 ~ 131571 (-)
G307518 NA non-coding upstream 28885 185274 ~ 185571 (-)
G307519 NA non-coding upstream 29325 185714 ~ 185948 (-)
G307521 NA non-coding upstream 32916 189305 ~ 189544 (-)
G307522 NA non-coding upstream 34709 191098 ~ 191926 (-)
G307622 NA non-coding upstream 158884 315273 ~ 339260 (-)
CI01000093_01042275_01068202 NA other upstream 911630 1041650 ~ 1068202 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G107145 NA non-coding NC_056713.1 CM032082.1 16139813 ~ 16167005 (+)