G307665


Basic Information

Item Value
gene id G307665
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 495774 ~ 499206 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU349595
TTAAATGTCAACATTTAATGAGCTTCACCACTGTACTTCAAATCTACACTCTGAAAAGAGACCGGTGATTTTTCAAAACACAGAACACATCCACAGAGTCATTCCGGTCCCTCAGAATCACCTCCTCCGCTTTCAGGGCATCGAATGCAAATTTTATATTATAGTCATATATGTCGTAAAATGTATTCAAATACCATTAACTCTGAGTATAAACTTCAAACTTCCTTATAAAACTTGCAGTGCTGTACCTTCCCCATTTGGCCCGATCGAGCTTGTGTGTTTAGGCTCTGTTTGAATCCGCACGTTATCTCAGGTACGCCTGCTTCTTGTACGTTCTAACATTGCCACATATTTTGTACGTTTATCTCATCTGACGTCTCTCGGTGAAGGATGTCATGTTAATTATCGTAGGTTGTCTCGCAGGACAAGTATGCTGTGTGATCTAACAGTCAGAGAACACTGGGGTGAGAACATGGTACTTTGTACAAGGATATGATGATGGGAACCACCTCCAACCAATCTCAAATTTAATGACTTTGATTTCTTTATACAGGGTTTGATAGGAATATAAAAGTCGGAAGGGACATTCAAGTTTTAAATCTCCACATAAAAATAAAAGCGTGGAGGTAAACAACCAAGTCATTGAGCTCGAGAGGTAGAGACCAACAATGTGAATCCATTATATACATATACACAAACAGTTCAGTGTTTCTTTAAAGGAAATTAATAATAATAATAATAATAATATTAATAATAATAATTAAAAAAGGGCTCTACTTCAATACTCATATCCACAGCTCTGCAGCACACAAGACACAATTAACATAATTGGTTATGTGTTTTTTGTTTGTTTTTGTACTTATACTGTTTTGGATTATTTCTTTGTCTACACTTTCTAGTGCAGGGGAAAATAAAAAGAAGAAAAGAGAGAGAGAGAGAGAAAAAAAATATGTACAATTATATGCAAGTCTCAAAAATAAAATCAAATTTCACAGCCCTAAAAAATGTGCAGGCTAATTCAACTTCTATACAGCAGTATTACATTTTTTTTGGCGTTTTTTTTTCTTTTTTATCGTCCTTTTTTTTTTTTTTTTTTTTTGCACTGATATATTATTTTCATAAAAATGGATCGCATTTTCAAAAATACTGAACACAGCCACAGTTATCAGCAGCTCTTGTCATGTGACAAATCTCATTCTCACTTCTGAAATGTAAAAT
>TU349594
TTAAATGTCAACATTTAATGAGCTTCACCACTGTACTTCAAATCTACACTCTGAAAAGAGACCGGTGATTTTTCAAAACACAGAACACATCCACAGAGTCATTCCGGTCCCTCAGAATCACCTCCTCCGCTTTCAGGGCATCGAATGCAAATTTTATATTATAGTCATATATGTCGTAAAATGTATTCAAATACCATTAACTCTGAGTATAAACTTCAAACTTCCTTATAAAACTTGCAGTGCTGTACCTTCCCCATTTGGCCCGATCGAGCTTGTGTGTTTAGGCTCTGTTTGAATCCGCACGTTATCTCAGGTACGCCTGCTTCTTGTACGTTCTAACATTGCCACATATTTTGTACGTTTATCTCATCTGACGTCTCTCGGTGAAGGATGTCATGTTAATTATCGTAGGTTGTCTCGCAGGACAAGTATGCTGTGTGATCTAACAGTCAGAGAACACTGGGGTGAGAACATGGTACTTTGTACAAGGATATGATGATGGGAACCACCTCCAACCAATCTCAAATTTAATGACTTTGATTTCTTTATACAGGGTTTGATAGGAATATAAAAGTCGGAAGGGACATTCAAGTTTTAAATCTCCACATAAAAATAAAAGCGTGGAGGTAAACAACCAAGTCATTGAGCTCGAGAGGTAGAGACCAACAATGTGAATCCATTATATACATATACACAAACAGTTCAGTGTTTCTTTAAAGGAAATTAATAATAATAATAATAATAATATTAATAATAATAATTAAAAAAGGGCTCTACTTCAATACTCATATCCACAGCTCTGCAGCACACAAGACACAATTAACATAATTGGTTATGTGTTTTTTGTTTGTTTTTGTACTTATACTGTTTTGGATTATTTCTTTGTCTACACTTTCTAGTGCAGGGGAAAATAAAAAGAAGAAAAGAGAGAGAGAGAGAGAAAAAAAATATGTACAATTATATGCAAGTCTCAAAAATAAAATCAAATTTCACAGCCCTAAAAAATGTGCAGGCTAATTCAACTTCTATACAGCAGTATTACATTTTTTTTTTTTTTTTTTATGTAGATTTTGCGTTTCTATTTAAATCTACCTGCTACTCACTTATTTACATACCATACTCAGTGGATCATGGGAAAGCATGCCATAGCACATTGAGGAAGAAATAAAAATAATTATCTAAAAATATATTAAATATTTTCCATTTGTTTTCTTTTAGTCTGAGAGAGTGCAGAAAGCATTATGGGAAATTTAAGCATGGTACAGTGAGTGAAAACTACTTCCAGTTGCTTTCTAGACCCACAACATATGCCATTCCCAGGCACCCTTTTCAGATCCACAAGTCCTTCAACACAGAAAAAAGGCTTTTGAAGGGGGGGTCAAAGAAGACGACACCGAGCTGACGTACACAGGATCACTAGCGTGATGCCACAGTCGGGTATAAACATGCACGGGTCCATACATGCACTCACAATGGTGTTCGTCACTTGTCTTCAGGGACAAGGTTTGGTAATATACCATTGCAGTTATGGAATGGTTTGGTTGACCAACAGCTCAACCTATTATTTATCTAATTTCTTTGCTTTTTTTTTGTTTTTAGGCTTTTAATTTGGTTTGCATGCTATTCTAGATACTCCATCAGGGATAGCATTGAAGGTCACCTCCCTATATTATGTCGCTACATGCTAGTTGGGTTTTCAGTCTCGGTAGGAGACGAGCACCTGCAAGATTTCAGGACACGCACATAAAGTCTCCTTTGCTTCAAATAAACCCTTTAGATACGAGCGTTTCGTTTCGAGCCAATCTCGCATGCTTTGGATCCTCAACCGCTGTGCCATTCAGTCACCCACCCACCAGAAGTACTAAATACTGACACAACACATCCACATTGAGGAGTACTAAGAGAAGCCTATGAATCAGTATCTCTGCCGAGTGCTGCGCTACAGAATACTGATTTATTTCTTATTATTTATGAGACGGAAAGTGAGATACGAACAAAGATAGATCTATAGAGAAAGGAAGAGCGCAGATGACAGCAAAAACGGAAGAAAGTCATAAAAATCACACCGCCGTTGAAGGAAATAAACGCAATGAGCAGCTCACTCTAGCCGAACGAGTGGTCACAGTTCTAACGAGGGCCGTCGCTAAAATTGACAAGGCCCGGGACAAATTTATATGGGTTGGCCTAATGTAAAGGCTACTACAGAGGACCTTTGAGGGCTGAGACAGCAGTTTTCCACCCTAGACGATGGCCCTGGTTCTTAGTAAGGTGCTAGCGTGAGCAAAAAAAAAAAAATCTGATTTGGAGAAACTTGCCTTCTTTCCATACTACATGAAGCACTGCACTTCCTGTTTCCATGAATAAATAAAGCATGATTACTCGCACACATAGTCGTGAAGAGTTTTCCTTCAGGGATACTGCGCAGATTCTGCTGCCCTGCTGTTCAAAATACATTCAAGTCCACAGGGGTCGACTTCATCTGCCGAAAGTACATGTTCATGAGCGCGAACCTTCAGTATACTACTACAGAGCAGTGGGTATGTATGAACGGACCCCCCGTGACCACGCCCACCCTTCCCGTGTCCCGCTTCAACTCATCAGCAGTGGTTGCTTCTATAAAACTCCCATTTAGTAAGTATTACAGTACACACACACACACACATCAGCGACATGGCTAGTCCTAGACTCCAGTGAAATGCTACGCAGGTTTGGGGAAGCCTGGGGGTCAGTAGTCCGTGGGGGGCGAGGGGTGGACGCGGGACGGGCCGCGGGAGGGACGTCCTCCGCCACCGTTATCAACGCCATCTTCTCCGCCATCCTCAGCTACTCCCAAACTAGAGGAGATGGAGGCATCTCAGAGGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU349595 False 1218 lncRNA 0.34 2 495774 499206
TU349594 True 2866 lncRNA 0.41 2 496314 499206

Neighbor

gene id symbol gene type direction distance location
CI01000093_00441786_00443029 NA coding downstream 52184 441368 ~ 443590 (-)
CI01000093_00372074_00372877 NA coding downstream 122749 371795 ~ 373025 (-)
CI01000093_00224221_00233968 NA coding downstream 259332 223865 ~ 236442 (-)
CI01000093_00044285_00045637 NA coding downstream 450122 44014 ~ 45719 (-)
CI01000093_00021721_00029528 SAMSN1A coding downstream 466246 21721 ~ 29528 (-)
CI01000093_00601248_00607534 NA coding upstream 101879 601085 ~ 607729 (-)
CI01000093_00633602_00642455 NA coding upstream 132420 631626 ~ 642522 (-)
CI01000093_00643216_00644177 NA coding upstream 143769 642975 ~ 644177 (-)
CI01000093_00693070_00700737 NA coding upstream 192863 686323 ~ 706880 (-)
CI01000093_00716586_00720543 NA coding upstream 217363 716569 ~ 720866 (-)
G307568 NA non-coding downstream 69341 425760 ~ 426433 (-)
G307671 NA non-coding downstream 86631 408793 ~ 409143 (-)
G307673 NA non-coding downstream 91528 403800 ~ 404246 (-)
G307662 NA non-coding downstream 96835 398506 ~ 398939 (-)
G307618 NA non-coding downstream 115244 379933 ~ 380530 (-)
G307715 NA non-coding upstream 10555 509761 ~ 510131 (-)
G307717 NA non-coding upstream 12363 511569 ~ 511780 (-)
G307718 NA non-coding upstream 15864 515070 ~ 515432 (-)
G307543 NA non-coding upstream 19711 518917 ~ 525677 (-)
G307540 NA non-coding upstream 26527 525733 ~ 528396 (-)
CI01000093_01042275_01068202 NA other upstream 568813 1041650 ~ 1068202 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009324 NA non-coding NC_007126.7 CM002899.2 30300780 ~ 30305800 (-)
bowfin (Amia calva) AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding CM030142.1 CM030142.1 3229689 ~ 3256106 (+)