XLOC_000011


Basic Information

Item Value
gene id XLOC_000011
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 156792 ~ 157282 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003002
CACACTATTAAGGGTATATAGCACAAACAGCTGCCTACTGGTGAAACTATCGCATTAATGAGTCACCTGCACACTAGAGCTGAAAACACTACAATCCAAACAGCTAGGGTGTAAATGAAGCGTGCACACTGTTGAGGCAATACAGCAGAGATATGCCTACTGAGTACACTACCCGCACTAATGAGATCATACACCCATCACCTGCACACTAGAGCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003002 True 218 lncRNA 0.45 2 156792 157282

Neighbor

gene id symbol gene type direction distance location
XLOC_000010 prozb coding upstream 4794 144284 ~ 151998 (+)
XLOC_000009 f10 coding upstream 14323 135903 ~ 142469 (+)
XLOC_000008 f7i coding upstream 22713 127250 ~ 134079 (+)
XLOC_000007 f7 coding upstream 31546 119960 ~ 125246 (+)
XLOC_000006 f7l coding upstream 37646 109798 ~ 119146 (+)
XLOC_000012 cul4a coding downstream 511 157793 ~ 167398 (+)
XLOC_000013 lamp1a coding downstream 19301 176583 ~ 182258 (+)
XLOC_000014 tmco3 coding downstream 61242 218524 ~ 225137 (+)
XLOC_000015 tfdp1b coding downstream 69959 227241 ~ 243798 (+)
XLOC_000016 grk1a coding downstream 87794 245076 ~ 258138 (+)
XLOC_000018 NA non-coding downstream 198199 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 419162 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 637694 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 858530 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 non-coding downstream 1061409 1218691 ~ 1218805 (+)

Expression


Co-expression Network