XLOC_011007 (gapdhs)


Basic Information

Item Value
gene id XLOC_011007
gene name gapdhs
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45044642 ~ 45069882 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021505
GGTGACCAACCCGGGTGGCACGTGTCCGGTATAAAATGGAGCAGCATTACGCGGAAACTGAGCAGAAGCCGCAGCAGCATCACTGAAGGAGGTTTAGCACCACAATCCACACTCTTGCAATAATGTCTGAGCTTTGTGTTGGAATCAATGGATTTGGCCGTATTGGCCGTTTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATTAAAGTCACCGCCATCAACGACCCCTTCATTGACCTGCAGTACATGGTCTACATGTTCAAGTATGACTCCACTCATGGCCGTTACAAGGGAGAAGTTCACATGGAGGATGGAAAACTGATTGTTGATGGTCAGGCCATCTCTGTGTTCCAGTGCATGAAGCCTGCTGAGATCCCATGGGGTGATGCTGGTGCCCTGTACGTGGTCGAGTCCACCGGAGTCTTCCTCAGCATTGATAAGGCCTCAGCTCACATCCAGGGTGGAGCCAAGCGTGTGGTTGTGTCTGCTCCATCACCCGACGCACCCATGTTTGTGATGGGAGTCAACCAGGACAAATATGACCCCTCCAGCATGACCATTGTCAGCAATGCATCCTGCACCACTAACTGCTTGGCTCCTCTGGCTAAAGTTATTCATGACAACTTTGGTATTGAGGAGGCTCTCATGACCACAGTTCATGCCTACACCGCCACACAGAAGACTGTCGATGGCCCCTCTGCCAAGGCATGGCGTGATGGACGTGGCGCCCACCAGAACATCATCCCTGCATCCACTGGTGCCGCCAAGGCTGTGGGCAAAGTCATTCCTGAGCTTAACGGAAAGCTGACTGGTATGGCTTTCCGTGTGCCAGTCGCTGATGTGTCCGTTGTCGACCTCACCTGCCGCCTTACAAGGCCCGCCAGCTACGCCAACATCAAGGAGTCTGTCAAGAAGGCCGCTCATGGGCCAATGAAGGGAATTCTGGGATACACAGAGGATTCAgTCGTTTCTTCTGACTTTGTTGGAGACACTCACTCTTCAATCTTTGATGCCGGCGCTGGCATCTCCCTCAATGACAACTTTGTCAAGCTCATCTCCTGGTATGACAACGAATTTGGCTACAGCCATCGTGTTGCTGACCTGTTAATGTACATGCACTCCAAAGAGTAACTCCGCAGAAAAGCCAGACCATTCCTTCTTTTCAACGCACTCATTTCCTAGCTAAAGCCATCGTGACACACCTTAGCATTCCTGTTCCCACCTACGAGACGCTGCATTCGTCTCTGtagatgtctgtgtgtgtgtgtgttagtttctTTTGACAGTATTTGTGTCAGTGTCACTCCACAGGCATTGCTGTAGTTGTTGCCATTTTGGGTGTAATCACGTTGTGTTGGTGTAAAGAGAATAACCGAATAAAGTTTAATGAGGTATAAAGGCTACTGTAATGcagtttaaaaaagaaactaattaaaatgtttggaaaaaCAAA
>TCONS_00021506
CACAATCCACACTCTTGCAATAATGTCTGAGCTTTGTGTTGGAATCAATGGATTTGGCCGTATTGGCCGTTTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATTAAAGTCACCGCCATCAACGACCCCTTCATTGACCTGCAGTACATGGTCTACATGTTCAAGTATGACTCCACTCATGGCCGTTACAAGGGAGAAGTTCACATGGAGGATGGAAAACTGATTGTTGATGGTCAGGCCATCTCTGTGTTCCAGTGCATGAAGCCTGCTGAGATCCCATGGGGTGATGCTGGTGCCCTGTACGTGGTCGAGTCCACCGGAGTCTTCCTCAGCATTGATAAGGCCTCAGCTCACATCCAGGGTGGAGCCAAGCGTGTGGTTGTGTCTGCTCCATCACCCGACGCACCCATGTTTGTGATGGGAGTCAACCAGGACAAATATGACCCCTCCAGCATGACCATTGTCAGCAATGCATCCTGCACCACTAACTGCTTGGCTCCTCTGGCTAAAGTTATTCATGACAACTTTGGTATTGAGGAGGCTCTCATGACCACAGTTCATGCCTACACCGCCACACAGAAGACTGTCGATGGCCCCTCTGCCAAGGCATGGCGTGATGGACGTGGCGCCCACCAGAACATCATCCCTGCATCCACTGGTGCCGCCAAGGCTGTGGGCAAAGTCATTCCTGAGCTTAACGGAAAGCTGACTGGTATGGCTTTCCGTGTGCCAGTCGCTGATGTGTCCGTTGTCGACCTCACCTGCCGCCTTACAAGGCCCGCCAGCTACGCCAACATCAAGGAGTCTGTCAAGAAGGCCGCTCATGGGCCAATGAAGGGAATTCTGGGATACACAGAGGATTCAgTCGTTTCTTCTGACTTTGTTGGAGACACTCACTCTTCAATCTTTGATGCCGGCGCTGGCATCTCCCTCAATGACAACTTTGTCAAGCTCATCTCCTGGTATGACAACGAATTTGGCTACAGCCATCGTGTTGCTGACCTGTTAATGTACATGCACTCCAAAGAGTAACTCCGCAGAAAAGCCAGACCATTCCTTCTTTTCAACGCACTCATTTCCTAGCTAAAGCCATCGTGACACACCTTAGCATTCCTGTTCCCACCTACGAGACGCTGCATTCGTCTCTGtagatgtctgtgtgtgtgtgtgttagtttctTTTGACAGTATTTGTGTCAGTGTCACTCCACAGGCATTGCTGTAGTTGTTGCCATTTTGGGTGTAATCACGTTGTGTTGGTGTAAAGAGAATAACCGAATAAAGTTTAATGAGGTATAAAGGCTACTGTAATGcagtttaaaaaagaaactaattaaaatgtttgg

Function

symbol description
gapdhs Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Predicted to be involved in glycolytic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; digestive system; female organism; nervous system; and neural tube. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDHS (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic).

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051287 NAD binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

ZFIN:

id description
ZDB-GENE-020913-1 Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Predicted to be involved in glycolytic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; digestive system; female organism; nervous system; and neural tube. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDHS (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic).

Ensembl:

ensembl_id ENSDARG00000039914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021505 False 1452 mRNA 0.50 11 45044642 45069882
TCONS_00021506 True 1343 mRNA 0.49 10 45044651 45058919

Neighbor

gene id symbol gene type direction distance location
XLOC_011006 tmem147 coding downstream 2406 45019449 ~ 45042236 (-)
XLOC_011005 BX511252.1 coding downstream 26102 45018424 ~ 45018540 (-)
XLOC_011004 NA coding downstream 30162 45012914 ~ 45014480 (-)
XLOC_011003 sult2st3 coding downstream 42800 44983613 ~ 45001842 (-)
XLOC_011002 ncam3 coding downstream 99418 44920012 ~ 44945224 (-)
XLOC_011008 si:rp71-77l1.2 coding upstream 7711 45077593 ~ 45080812 (-)
XLOC_011009 si:rp71-77l1.1 coding upstream 17928 45087810 ~ 45098706 (-)
XLOC_011010 FP085399.2 coding upstream 34731 45104613 ~ 45106574 (-)
XLOC_011011 FP085399.3 coding upstream 61039 45130921 ~ 45134479 (-)
XLOC_011012 FP085399.5 coding upstream 70976 45140858 ~ 45144372 (-)
XLOC_010626 CR392024.2 misc downstream 24149467 20895112 ~ 20895175 (-)
XLOC_010993 NA non-coding downstream 749093 44180775 ~ 44295549 (-)
XLOC_010992 NA non-coding downstream 884777 44154484 ~ 44159865 (-)
XLOC_010989 LO018541.1 non-coding downstream 1489063 43555464 ~ 43555579 (-)
XLOC_011015 FP085399.6 non-coding upstream 104564 45174446 ~ 45174560 (-)
XLOC_011016 FP085399.4 non-coding upstream 116791 45186673 ~ 45193152 (-)

Expression


Co-expression Network