G316296


Basic Information

Item Value
gene id G316296
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000105
NCBI id null
chromosome length 3526334
location 382583 ~ 386193 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU359669
GCATGATAAAAAATGAGGGGGTGGGCAAGGGGAAAAAAACAGCACATTGAAATATAATTGTAAGTCTTGTAAATAGTGTAAAACCTATGGCACACACTCACAGCAGCTTTAACTCATTACAAATTCACACATGGAATACGAACAACATGATGCTGATGATTTCTACAGGTCTCAAATGACATCCATTCAGCTCAACACTGAGGTAAAGACTTTCAGTTTCATTTTAAGGCTTCTGTTGTATAACGACCACTTTTGGCCGTATTCTCAACCGACAGAGACATTGCTGAAAAGTTGTCAGTTTTTTAGTAAAAGCTACTTTTTCCCCCACAATCACATCCAGTATGAGAAAAACCAATAAATGTGACCTTGAGTAAAGCCGACTGCCATGAAAAGTTAATTTAGATGGATAAACACTACATTTACTCATATTAGGGCTGGGCGATATAGCTAAAAATATTGATATTTTTTCAAATTTTGATTTTTTTCCCCCCCATATTTGTTTCCAAAATTTAAAAAAAAAAAAAAAAAAAAAAAGTGATCTTTTTGGTCCCCCATGAAAAAGAGATCTAGATAGAATGGTTAGTCGCAAAATACATACCGTTTACTGCAAAATCAACACTAGTTTATTCATTAACTTATCTTATTTATATGAACCTCTTATTTACATCATGTTTACAGTTATAATGAAAGGATTCGCGAGCATGTAGAACACAATATGTGATCGTGCTGAATGAAAACTCCAGCGTTTTGAGCAGTATTGAGTGGATTCCCCACTAACTTAAACACCTGTGATTGGTCATTGTGTTTGGCTACTTGATGCTGTTACACATACGCATGGGATTTGAAAACAGCTGTCTTTCTAAGATAAACTTTTAACATTAAAAGATAATATTGCCAATATTCAATGTATCGCCCAGCCCCAACGCATACTATGCAGGGTTAAACACTACGTTTTAGAGGAATTACTCAGCAATTGTTTTTTTTGTTTTTTCGCAGGGAGGTATGTCCTGCCGGCGGTACACTTCGGGCTTAAGGGGTTAAAAAAATAATATTTCCAATATTCCATGTATCGCCCAGCCCTAACGCATACTATGCGGGGTTAAACCTGATTAGATTCTTTGGTACTTCAAAAATAACGTGCCGGGGAGGAGTTTTAATTCACAGAATGAGAGTTAACTGGCGGTAAAGTTCTAGGTGAGGATCGTTCCCTTAGTGCCTGAGACAGGAGTGTGCACCCGTCCGAGACGGCGCACGCGGAGTTGCGCAGCCGTTCCCGGTAGACGGGCATCTGCGAGCTGCTCTCGGGATGCTGGGAAATATCTCTGAGGCCCTGGGTCAGGAGCACGCAGGCCGACACCACGCTCATGGCGCCGCCCAGAACGGCCGTCTGCACCCCCTTGCCCTCGGGGGTGATGGTGGCGGCTTTGCCGAGGAACTGCGGCTCTGTGGCAAAACCCACCAAGGCGTGCACAGCCTGCACGAGCGGGCCGCTGAAGAGGACGCAGCGGTTGCGCGTCAGCTCGCTGGGGCAGGCCTTTAGCTCACGTACGCACGCCAGCAGAGCCGTGGCGCTCGTGCTCATGCACTTGACGCTAGCTTTGAACTGCTCCTTGGCGAACTTGTCCTTGGATTTATCACTGGCCAGAGAGGAAGCGTCCGTGAGCGTGGTGAGGTTCTTCAGGATGTTCTGTGACACCTCCAGAAGGAGCTGCGGCGTCAGGTCGGCCAGAGCCGTCAGGCGGAGGATGTTGCACGTCTGCTCCACTTCGTGTCGGCAGCGGGTGACTTTGTAGCGGTCCACCAGGCCGGGAACGGCGGCCTGCGAGCCCGGGATCTCCACGGCCGCCAAGTACGCGGCGTGCGCCGAATACTCGGTCAGCGAGACCACCAGGTCCCCCATCTCCACCAGTCGGTCCCCCACCTCCACAAACTTCCCCATGTTGAGCTGGCTCTGAATGTCATGAACAATAATAGACAACTCCTTAGTCCGCGCGATCAAGGTGTCGCGACACTTCTCGAACGTCTCCGCGATGGCCGTGCCGTCGGAGTTCACCACCGGCCTGGTCTCGCTGGACAGCAGGAGCAGGTCCGCCACCAGCTGCATTTTGCTCTTGCATGCGTCACAGATGGATGAAAGTCTTTTCCTTTGTTGCAAGCTGCCGCTAAGGATGCTGGTAGAAACCTCGCTATCTGATTTTCCAGAGCCACTACTAGCCATAGTAGTGTGGTCGCTCTAATGTTCAAAATAAAGATCGCGACACACGTTCTGTGATTTATGTCATTTTCTTCAGTAAAAAAAGATTTCCACACCTTCTCAAGGAGAGTGAAAACTGGCCAAAGAGTCTATAATGTCCTTCAGAAGAAAAAGTCCACTCAGCTTCTTTGCGAACTCACACAGGATAACTCAAATAACATGAAACTTCACTCAATGCGCTTGCGAGAATAAGGAAAGTATTTTAGAAAAATATTCTTATAATATAAAACGCGGGCAAAATAAGCTGATGAGAGCTATAATTAAATATCCCTTCAATTGAAACACTCGGAATTGCCCAATGTTTAAATAATCAGATTTTAGGTGTGCATAACGAAAAGAAAAAATTAAAAATACAATTCACAACTACCTCTGTTAAGGTAGGCTACAGTCTGATCAGTTTCACAGGTTGTTGCTCCAACAAACCAAAAAAAAAAAAAAAAAAACGCTTTACTGCAGTGCCATGAAGATGCCCAGATGAAGGCAAAGTGCAGGTTGACTTCCAAAATCTGTCATTTCAGGTTTTCTTCGTGTCATGCAAATTAAATGCATTTAAATACACGTCCTGCAATGTGATGCTGCTGCTGCTGATGTATTGACCGTCTTGCTGACCCTCCGTCCGAAGCGCGAGACGCGCGGGCGCCCCGCCGCCACTGCACCATCATCCCACGACACCTCGAAAACTCATAAAACGTTCCCGAACGACTTTCAGCCGTTTCTTTTTCATACACAATCCAAGTTCTGTGGGAAAACTCAGTTCCTTATGCATATCTATTGTCCATACGCCCTCTCCAGCAGAAAAGCAACGGTAGTCCAGTGGCAGATAGTTTCGCTTTTGCTTGCCATCGTTTTAACGCTCGGGCTAATGTTTTAATGCGGTTTCCGCGACAATAACGAACTTAGTTCGCTATTGAGACTCTCGCGCGTCGGTTGTAGTCTCCCGCTACATCTTGCGTATCAGGAAGCGGCGGGAGGGTGTGGCTGAATAGCCTGTTAGCTTCCCTCAAAGTCCGACACTTTTATACACTCCACAAGCATTATTCCTGGTCAGAGAGACGAAACTCCTCCTTTTAATTCAGCAACCGCTCAACCGATACGCTTATTTTTCTGAGGTAACGTTAGTCGCGCGAGAAGTCGTGTTCATTCCTCACCAGTCATCGTTTCCCGAGGCCCCGATGTGAGACTCAACTACCGGTCTGAGGGCAAAAGTTACACCCAAAGCCAAATTCCAGAGAAGTTCCTTCTGTTATCCTTTTTGTTTGGTTGGTTTTTCCTGTTTCTGGTGTTTCGCTCCCACAGTTTGCGCTTCCCTGTAAATCCAACAGGTCTCTCGCGTGTGGGGTATTTACTACTTTCACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU359669 True 3611 TUCP 0.46 1 382583 386193

Neighbor

gene id symbol gene type direction distance location
CI01000105_00218267_00227612 NA coding downstream 154841 217088 ~ 227742 (-)
CI01000105_00012068_00022140 ZFAND6 coding downstream 360443 11438 ~ 22140 (-)
CI01000105_00436372_00441337 STARD5 coding upstream 49706 435687 ~ 441792 (-)
CI01000105_00445353_00446220 NA coding upstream 57902 444095 ~ 446220 (-)
CI01000105_00449773_00454701 NA coding upstream 63580 449773 ~ 454701 (-)
CI01000105_00665697_00668298 MEX3B.S, MEX3B coding upstream 279361 665554 ~ 668298 (-)
CI01000105_00820704_00861875 EFL1, EFTUD1 coding upstream 434382 820575 ~ 861875 (-)
G316318 NA non-coding downstream 166599 215731 ~ 215984 (-)
G316317 NA non-coding downstream 167091 215130 ~ 215492 (-)
G316305 NA non-coding downstream 186966 194999 ~ 195617 (-)
G316194 NA non-coding downstream 254585 61037 ~ 127998 (-)
G316206 NA non-coding downstream 325486 56699 ~ 57097 (-)
G316361 NA non-coding upstream 5256 391449 ~ 391791 (-)
G316295 NA non-coding upstream 37724 423917 ~ 425226 (-)
G316297 NA non-coding upstream 43456 429649 ~ 430671 (-)
G316512 NA non-coding upstream 567656 953849 ~ 954251 (-)
G316592 NA other upstream 949843 1336036 ~ 1394972 (-)
CI01000105_01638030_01639731 NA other upstream 1251846 1637849 ~ 1639943 (-)
G316716 NA other upstream 1266100 1652293 ~ 1652634 (-)
CI01000105_01891362_01892340 NA other upstream 1496950 1883143 ~ 1893784 (-)
G317081 NA other upstream 1647436 2033629 ~ 2094009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G28032 NA non-coding CM030123.1 CM030123.1 40277414 ~ 40277687 (+)