CI01000112_03344466_03359943 (CYTH3, CYTH3A)


Basic Information

Item Value
gene id CI01000112_03344466_03359943
gene name CYTH3, CYTH3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3344466 ~ 3360296 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_03344466_03359943.mRNA
TACCTGAAGACCTGTCCTTAGAGGAGCGAGACGAGCTGTCCAACATACGCCGCAGGAAAAAAGAACTGCTTGATGATATTGAGCGCTTGAAGTTTGAGATCGCAGAAGTGATGACAGAAATCGAGCAGCTCACATGTGTGGGCGAGAGTCTTATTAGAGGATATTTGTTAAGACATATTTACTTCATTTGCAGCAAAACAACACAGAGAAACAAACAAATTGCAATGGGAAGAAAGAAATTCAACATGGACCCCAAAAAAGGGATCCAGTTTCTACTGGAGAACGACCTCCTGCAGCAGACGCCTGAAGACATCGCTCAGTTCCTCTATAAAGGAGAAGGCTTGAACAAAACTGTCATTGGGGATTACTTGGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTAGAGCTCCATGAATTTGCCGACCTCAACCTCGTTCAGGCTCTGAGGCAGTTTCTGTGGAGTTTCAGACTTCCCGGCGAGGCACAGAAGATTGACAGAATGATGGAGGCGTTTGCGTCCCGGTACTGCCAGTGCAACCCTGGAGTCTTTCAGTCTACAGACACATGTTATGTCCTGTCCTTCGCCATCATCATGCTGAACACCAGCCTTCACAATCCCAACAACCTGTACGAGAGCATCAAGAGCGAGCCCTTCAAAATCCCAGAGGATGACGGCAACGACCTCACACACACGTTCTTCAACCCGGACAGAGAGGGCTGGCTGCTGAAGTTAGGTGGACGAGTAAAAACTTGGAAGAGGAGATGGTTTATTCTGACCGACAACTGCTTGTACTATTTTGAGTACACGACAGACAAGGAACCACGTGGAATTATTCCTCTGGAGAACCTCAGCATCAGAGAGGTGGAGGAACCCAGGAAACCTAACTGCTTTGAGCTGTACAATCCCAACCATAAAGGGCAAGTGATCAAAGCGTGTAAGACAGAGGCAGATGGGAGGGTGGTGGAGGGAAACCACGTCGTCTACAGGATATCAGCACCCACACCAGAGGAGAAAGAGGAATGGATCAAATCCATTAAGTAGGATTTCCTGCCTATTGAACATATTCTAATGGTTAAATAGTCTTGTTCAGTGCTCTTGTCACTGGCTGTCACCCATTACTGAAGAAATGCAGCATACAGTGATGATGGTAACTCTGATGAGCTGCCACATTGTCAACAACAACAACAAGCATAGGTACAACAACAAACATAAAATGAAGGCAGTGAAAAATGTGGTAACATGATATACCACAATTTTTTATTTGCTTTACTGTAATGAGAATGTGATTATTTATTTATTTATGCATTACAATAATGAGAATGTGATTATTTATTTATTTATTTATTTTTGCATTAAAGTAATGAGAATGGGGGGATTACTTTATTTTCATAAAA

Function

symbol description
cyth3a Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH3 (cytohesin 3).
cyth3 Enables guanyl-nucleotide exchange factor activity and phosphatidylinositol-3,4,5-trisphosphate binding activity. Involved in Golgi vesicle transport. Located in cytosol; nucleoplasm; and plasma membrane. Is extrinsic component of cytoplasmic side of plasma membrane.

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_03344466_03359943.mRNA True 1408 mRNA 0.44 11 3344466 3360296

Neighbor

gene id symbol gene type direction distance location
CI01000112_03285278_03286531 STK19 coding upstream 57898 3284558 ~ 3286568 (+)
CI01000112_03234159_03240113 MHC1ZDA, MHC1ZBA coding upstream 104353 3233045 ~ 3240113 (+)
CI01000112_03192658_03204707 MHC1ZBA coding upstream 139434 3191661 ~ 3205032 (+)
CI01000112_03112349_03117520 NA coding upstream 226879 3112349 ~ 3117587 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding upstream 238193 3099448 ~ 3106273 (+)
CI01000112_03571702_03574425 NA coding downstream 211084 3571380 ~ 3574700 (+)
CI01000112_03608324_03621681 NA coding downstream 248028 3608324 ~ 3621688 (+)
CI01000112_03653384_03730444 NA coding downstream 293088 3653384 ~ 3730448 (+)
CI01000112_03759872_03772553 AXIN2 coding downstream 399507 3759803 ~ 3772982 (+)
CI01000112_03861399_03879738 TEX2 coding downstream 501103 3861399 ~ 3879752 (+)
G329339 NA non-coding upstream 37587 3306588 ~ 3306879 (+)
G329296 NA non-coding upstream 39071 3302179 ~ 3305395 (+)
G329334 NA non-coding upstream 42370 3301668 ~ 3302096 (+)
G329340 NA non-coding upstream 68580 3275564 ~ 3275886 (+)
G329354 NA non-coding upstream 125793 3218414 ~ 3218673 (+)
G329373 NA non-coding downstream 15985 3376281 ~ 3384378 (+)
G329380 NA non-coding downstream 26861 3387157 ~ 3387370 (+)
G329381 NA non-coding downstream 27954 3388250 ~ 3388451 (+)
G329413 NA non-coding downstream 172933 3533229 ~ 3543026 (+)
G329517 NA non-coding downstream 451238 3811534 ~ 3882944 (+)
G329194 NA other upstream 412577 2920254 ~ 2931889 (+)
G329125 NA other upstream 726315 2617704 ~ 2618151 (+)
G328456 NA other upstream 2111348 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1724424 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding CM030135.1 CM030135.1 10100924 ~ 10120054 (+)