G329296


Basic Information

Item Value
gene id G329296
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3302179 ~ 3305395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374316
GCGTGACCACATTGTTGTCTAACTCCAGAACAAATAACTTTTATGACTTATGATGAGCCTTTTTTAGTGAATCAAAAATAGATAGCTCAACCAGTGTAATCCAATTTCCGAAAGAACAACTCGGACGAACCGTTTATTTATTTATTTTATTTTTTATTTTTAATGAATCAAACGTGCTGAATTAGGAACCGCACACTAGCATGCTACTCTTAGTCCTTTTACCATATCTTTTTAATGCATGAATAAGAGTTTATGTGATTCCGAATTCACGACTGCCGGGGAGCATCTACAACAAGAAAACAAAACGAATGGTGTATGTATTTCATATATCTTAATTAATTTATTATTTTGAGCTAGGTGACTTAATTATTAAATTTAACATTAATGTTATGGAATAAAACTACGTTTAAACTGACGTTTACAGGAAGTAGAAGTTGACAACATCCGGTCGCGAGTCTATCTTTCCTAGTCAGAATCGAATGATAACAGGGTGTAGGATGATTTCATCCGATGTGAGATGACTGTTAGCGCGTCGGATCCTGACTGTAACGGCCGCTCATCATGTGTCATCTGTGAGAGTCAGTGAAGCGTCCTCTTATGGCGGGACTGTCGCATTTAGTGCTGCGTGTGTCGGGCTCGTACGGTGTGTTCTCTAAAGGGCTCAGCAGGACTCTGCTCATCTTCTTTGATCTCGCCTGGAGACTCAGAGTCAGATTCCCCTACCTCTATGTCATCGCCTCCATGATGTTTAACGTGCGACTACAGGTTCACATTGAGATACACTGACTGACATGGAATAGCTTCCTCTTCAAAACTTCAGCTTCTGGACACAAGCCCAGTAATGGCACTCAACTCTATCATTACCACAGTCTTAACCAGTGCAGCTCATGAATTATCTATAACTGGGAGACATACAGACCAAAACATGCTGACTGGAATACCAGTAGGAATTATTTATACAATATGGACATCGGCTTCATCGGAGGAGATGAATAGAAATGTATGATGATGCATCTCTCACGGTTTCATGTTACTTTATTTTAGACAGGTAAATACCTCATGCTCAGCCACTGGACAAGTGCGGACAGTGATTTAACCATGAGACTAAAATGGCAGACGTTTGGGCAAAGAGTTGCTGAGCTCCAGCGTGCTTCTAACACGGAGAGAGTGCATGATTAAAAACTTGAGCACAGCAGTGTTACAATGTGTTTTCTCCGCACATAATCATTTTTGCATATGAAGAGAACTTTCGATTTAATATATTGGTTTTGTTTAGTTGCATGACAGCTCACAGTGGGACGGACTGTATCGCACACCTCCATCATTTACTCACTAACACAGCAGCTACTGTTACACAAAACTACAGGGATTTGTACATATAGATGGATGTATTTGTTTGTGTTTTTGTTATTATTAAATATGTGCATTATTTGGCAAGTGCATTTTGGGAGGATTGTGAATGTAAGTGATTTAAACTTTGACAATAAATTATGAAGAGGTATTTTGCCTTGCCCTGCA
>TU374315
GTCTATCTTTCCTAGTCAGAATCGAATGATAACAGGGTGTAGGATGATTTCATCCGATGTGAGATGACTGTTAGCGCGTCGGATCCTGACTGTAACGGCCGCTCATCATGTGTCATCTGTGAGAGTCAGTGAAGCGTCCTCTTATGGCGGGACTGTCGCATTTAGTGCTGCGTGTGTCGGGCTCGTACGGTGTGTTCTCTAAAGGGCTCAGCAGGACTCTGCTCATCTTCTTTGATCTCGCCTGGAGACTCAGAGTCAGATTCCCCTACCTCTATGTCATCGCCTCCATGATGTTTAACGTGCGACTACAGGTTCACATTGAGATACACTGACTGACATGGAATAGCTTCCTCTTCAAAACTTCAGCTTCTGGACACAAGCCCAGTAATGGCACTCAACTCTATCATTACCACAGTCTTAACCAGTGCAGCTCATGAATTATCTATAACTGGGAGACATACAGACCAAAACATGCTGACTGGAATACCAGTAGGAATTATTTATACAATATGGACATCGGCTTCATCGGAGGAGATGAATAGAAATGTATGATGATGCATCTCTCACGGTTTCATGTTACTTTATTTTAGACAGGTAAATACCTCATGCTCAGCCACTGGACAAGTGCGGACAGTGATTTAACCATGAGACTAAAATGGCAGACGTTTGGGCAAAGAGTTGCTGAGCTCCAGCGTGCTTCTAACACGGAGAGAGTGCATGATTAAAAACTTGAGCACAGCAGTGTTACAATGTGTTTTCTCCGCACATAATCATTTTTGCATATGAAGAGAACTTTCGATTTAATATATTGGTTTTGTTTAGTTGCATGACAGCTCACAGTGGGACGGACTGTATCGCACACCTCCATCATTTACTCACTAACACAGCAGCTACTGTTACACAAAACTACAGGGATTTGTACATATAGATGGATGTATTTGTTTGTGTTTTTGTTATTATTAAATATGTGCATTATTTGGCAAGTGCATTTTGGGAGGATTGTGAATGTAAGTGATTTAAACTTTGACAATAAATTATGAAGAGGTATTTTGCCTTGCCCTGCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374316 False 1518 lncRNA 0.39 2 3302179 3305395
TU374315 True 1064 lncRNA 0.42 2 3302633 3305395

Neighbor

gene id symbol gene type direction distance location
CI01000112_03285278_03286531 STK19 coding upstream 15611 3284558 ~ 3286568 (+)
CI01000112_03234159_03240113 MHC1ZDA, MHC1ZBA coding upstream 62066 3233045 ~ 3240113 (+)
CI01000112_03192658_03204707 MHC1ZBA coding upstream 97147 3191661 ~ 3205032 (+)
CI01000112_03112349_03117520 NA coding upstream 184592 3112349 ~ 3117587 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding upstream 195906 3099448 ~ 3106273 (+)
CI01000112_03344466_03359943 CYTH3, CYTH3A coding downstream 39071 3344466 ~ 3360296 (+)
CI01000112_03571702_03574425 NA coding downstream 265985 3571380 ~ 3574700 (+)
CI01000112_03608324_03621681 NA coding downstream 302929 3608324 ~ 3621688 (+)
CI01000112_03653384_03730444 NA coding downstream 347989 3653384 ~ 3730448 (+)
CI01000112_03759872_03772553 AXIN2 coding downstream 454408 3759803 ~ 3772982 (+)
G329334 NA non-coding upstream 83 3301668 ~ 3302096 (+)
G329340 NA non-coding upstream 26293 3275564 ~ 3275886 (+)
G329354 NA non-coding upstream 83506 3218414 ~ 3218673 (+)
G329307 NA non-coding upstream 90348 3210141 ~ 3211831 (+)
G329277 NA non-coding upstream 203883 3097920 ~ 3098296 (+)
G329339 NA non-coding downstream 1193 3306588 ~ 3306879 (+)
G329373 NA non-coding downstream 70886 3376281 ~ 3384378 (+)
G329380 NA non-coding downstream 81762 3387157 ~ 3387370 (+)
G329381 NA non-coding downstream 82855 3388250 ~ 3388451 (+)
G329413 NA non-coding downstream 227834 3533229 ~ 3543026 (+)
G329194 NA other upstream 370290 2920254 ~ 2931889 (+)
G329125 NA other upstream 684028 2617704 ~ 2618151 (+)
G328456 NA other upstream 2069061 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1779325 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026835 SMIM10 coding NC_007114.7 CM002887.2 56565300 ~ 56569968 (-)
mexican tetra (Astyanax mexicanus) G184764 fabp2,LOC108434304 unknown NC_035917.1 CM008320.1 16751852 ~ 16756999 (+)