CI01000113_01716646_01752755


Basic Information

Item Value
gene id CI01000113_01716646_01752755
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1715749 ~ 1753351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01716646_01752755.mRNA
CTATATATTTGCTTGTGTTTAAATTTAATCCACACGTGTAACACACGTGACGAAACCTGATTGGTTCCAAGGTCGTTGAACAGCTCTGATTGGTTCTTATGATAATGAGCTGCAGCCACTCACCTGAGAGAAGCTGTTTACCAGATAAGCTGTGCAAATTCAATTCAATTCAATTCACATTTATTTGTATAGCGCTTTTCACAATACATATCATTTCAAAGCAGCTTTACAGAGAATGCATGTCAACATTACAATTTGGAGAATGCAGTTAGCTAATAATGTAATAATTTAGGCAATTAATTTACAATCACTGTTAGCAATTTAATTGAAGGTAGAAGCAAAGATCTCCTGGAAAAATGAATTACATATTAACAATAATTAGGATATATAGAAATTTGCGAATGTGCGTGTTGATCCAGATGTTGCATCTTCTGAAGTCCTCGCAGGAGTTGGTGCTGTCTCTTCAAAAGTGTTGGTCAACTGTAGTCTAATGTAGTTGTAGTCAACTGTAGCTTCAAATGTAGTCTATGTGCCTTGAATGTTAATAGAAGATTAAATTTAAATTGTTACATTATATAGAGTGATCGTGTCACTTTATAACACTTGGAAGAGACCACGCGATTCATATGCATTACTTTTTTTTTTATTGCAATGACTTTTTGAAACGTGAACAGTTTTGGTGAATCGTCTTTCATCGGAGGGATACGATACATTAAAATATCTCAGTTTTTCTTTCGTGTGGCTTTTGGAACCCCGTTATTTTGTGACTCCAGGTAAGATTTGTAGCCTATTTAATTAACGTTACTTGTCTGTGCCAGTTGTATTTTTGATACAAAGTGTAACACCGCGTCTTTTTCAATGCAGCTACATTCAATTTGACCAATCAGACGCGACCAGATGAAGATGCTGCCCGCAGAAGTTACTGTGCTGATTTCAAACATCCACTCTGGACACACTAAAGATCCTCCCAAACCAACTCTGACTGTTGAGCCACAGAGTTCAGTGTTCACTGGAGACTCAGTTACTCTCAGATGTGACATATATGATGATGGAGTCACTAGCTGGAGGTACAGCTGGTATAAAGGAAGTTCATTTAGTTTTTTCAGTGAACTACAGGAACACACATTCAGGTCTGTTTCTAAATCTGATGCTGGTAAATACTCCTGTTATGGAGCAGAGATTGAAGGATCACGACGCAGCTCGCACTTCAGTAATGAAGTTACACTGACAGTATCAGATCCCAGAGCAGTTTTAAGTGTTTCTCCTCAGAAGTGGTTGACTGAAGGAGATCCAGTGACTCTGATCTGTGAGGTTAACGGCTCCTCTACAGGCTGGACATTCAGCTGGTTCACTCAAACTGAAACTGGCTCATCAGACATCAGCAATCGCTATAAGCTCCTCTCAGACAGCAGCAGAGGATCTGGAGGAAAATACACTGTCAGTTCTGCTGCTCTAAACCACACAGGAGTTTATGTGTGTAGAGCAGAGAGAGAAAAAACAGCCTATAAAACACCATACAGCAACAAACAACCACTGTGGGTCACTGTGTCTCTGATCATCAGTCCCAGCAGAACTCAACACTTCACATTTGTCTCTCTCTCTCTGAGCTGTGAGAACAAGAGTAACTCTGATGGATGGACAGTCAGAAGATACACAGACAGTCGGGGGCTGGAAGATTGTTCATCATCAGTGTTTGGATCACAAACAGGATCTACATGTAAAATCAGCTCCACTGTCCTATCAGACACTGGAGTGTACTGGTGTCAGTGTGAATCTGGAGCGAAGTCTCATCCTGTTAATATCTCTGTACACTCTGGTGTGGTTCTGGAGAGTCCTGTTCATCCTGTGACTGAAAGAGATACTCTGACTCTACACTGTTTATATCAACATACAAACCCATCAAACCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAGTCAAACTACAGAGATGATCATCCCTACTGTCTCAAAGTCACATGAGGGTTTCTACTACTGCAAACACCCAACGAGAGGAGAGTCGCCCAAGAGCTGGATCTCAGTCAGAGTCTATGTTAACATGTTATTAATGAGTGATTTGTCAATTTCAGATCCCAGAGCAGTTTTAAGTGTTTCTCCTCAGAAGTGGTTGACTGAAGGAGATCCAGTGACTCTGATCTGTGAGGTTAACAGCTCCTCTACAGGCTGGACATTCAGCTGGTTTACTCAAACTGTAACTGGCTCATCAGACCTCAGAGTTCATTATGAGCTGCTTTCAGACAGCAGCAGAGGAGCTGGAGGAAAATACACTGTCAGTTCTGCTGCTCTAAACCACACAGGAGTTTATGTGTGCAGAGCAGAGAGAGAAAATTACACAACATACAGCAACACACAACTACTGTGGGTCACTGGTGTTTCTCCTCCAGTGTCTCTGATCATCAGTCCCAGCAGAACTCAACACTTCACATCTGTCTCTCTCTCTCTGAGCTGTGAGAACAAGAGTAACTCTGATGGATGGACAGTCAGAAGATACACAGACCATGGGGGGCTGGAAGATTGTTCATCATCAGTGTTTGGATCACAAACAGGATCTACATGTAAAATCAGCTCCACCAGAATATCACACACTGGAGTGTACTGGTGTCAGTGTGAATCTGGAGCGAAGTCTCATCCTGTTAATATCTCTGTACACTCTGGTGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATGCTCTGACTCTACACTGTTTATATCAATATACAAACCCATCAAACCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAACTACAGAGATGATCATCCCTACTGTCTCAAAGTCACATGAGGGTTTCTACTACTGCAAACACCCAGAGATAGGAGAGTCGCCCAAGAGCTGGATTTCAGTCAGAGGTGTAAGATCTGAGTCTCCCTCTGCTGTCAGTCAACAGCAGAACATCAGTCAGACATCAGAGCAGAACCAGAGTGAAGACGGATACAACACACTGCTGTCTGACGGTGAAAGTGGACAGACTGAGATCACATATGCTGAGATTGAAATGAAATCTACAAAAAAACAAAAGAAAGAGAAAGAAAACAAAGTCAAAAACACTGAGAGTTGTGACGGCCTGTACTCTGAACTGAAGCTGGAAACAGATCAAGGATTTCTCAGGATGAAGCTGTCCCCCAACGCCGTGCAAAATTGCTACGGCAATGGAAAAATGGGCAGCAAAGTGAACTCGAATCACCAGGAACAAGGACGGACACTGCAATCTTCACAGCAGCCTTCCTGTTTTCCGTGGAGATGCAAACAACTATCGGATATGTCTACCAATATGTATATATTCGACACTGGTATTGGCCGTATATTTTTAATGTCCCACATCACCATTGTCCATGAGATTGATGAGGACAGTCCATTCTATGACGTGAGCAAACTGGAACTGGAGCTGAAGATAGTCGTGATTTTGGAGGGCATGGTGAAAGCTACAGCCATGACCACTCAGTGTCACAGCTCTTACGTGACGAGCGAAATCTGTAGGGTCATCATTTTGCGCCAGTCCTTTTTGAGGAGAAAATTCATTACAAAATGGACTATTCGCGCTTTTGAGAACACATATGAGGTTCCCATCACGCCTCAATGGAGCACTCGAGATTTGGCCAAAAAGAAGTACATCACATCTAGCTCTAACTCTTTTTGATATGAGAACGAAGTAGCCTTCATGGATAAAGAGAAAATGGAGGATGACGACGACGATGATGATGATGACGAGGACCAGAATAACATCAGAAGAGACAGTGTGGCCTTGGAAGGATCCGATATTGATGATGTTAAAAGCACGGCTTCCAGTCAGGATACTCTACCACTTCAACTCAAAGCTTAAAGACAGCAGAGATATGATGATTTAAGAAAGATGCTTTGTATGTGGTGACATTGCTGTACAGCATAAAAATGAAAAGGCCTGACAGGAAAAGCTGTTTTGATGCTGTTTTGAGAGCATGTTGATATTGATTTGAGAGGAACCCAGAAGGTTGGGTTGCAGATGTCTTGAAACATTCGCTTTGGCTTGTTATTTAAGAAGACAGAACTTTCAAATTTATTTTGACACTTTATACACAACCAATTTGTAATATAGACAAGAGCAACACACATTATAGATAATATAAACTCTGTTCTAAACCAAGGAAGTCAATCAAAGCAACTTAAAACCAATCCCAAAACAATCAAAACAACTCAAAATGGCTCATACATGGCACTTTTTTTTTTTTTTTTTTTTTAAATTAATCCACTCCTAGA

Function

NR:

description
leukocyte immune-type receptor TS32.15 L1.1a, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01716646_01752755.mRNA True 4307 mRNA 0.41 16 1715749 1753351

Neighbor

gene id symbol gene type direction distance location
CI01000113_01698764_01709585 NA coding upstream 6041 1698624 ~ 1709708 (+)
CI01000113_01691097_01696776 NA coding upstream 18973 1691062 ~ 1696776 (+)
CI01000113_01666106_01684663 NA coding upstream 31048 1666066 ~ 1684701 (+)
CI01000113_01547153_01553082 NA coding upstream 161963 1546736 ~ 1553786 (+)
CI01000113_01530888_01533572 NA coding upstream 182177 1530791 ~ 1533572 (+)
CI01000113_01761054_01815819 NA coding downstream 7576 1760927 ~ 1815997 (+)
CI01000113_01826332_01833431 NA coding downstream 72503 1825854 ~ 1833529 (+)
CI01000113_01834891_01839297 KCNJ2, KCNJ2A coding downstream 81540 1834891 ~ 1840126 (+)
CI01000113_01983091_01989335 NA coding downstream 229740 1983091 ~ 1989335 (+)
CI01000113_01994682_02001599 DNAAF5 coding downstream 241331 1994682 ~ 2002028 (+)
G331756 NA non-coding upstream 77316 1638118 ~ 1638433 (+)
G331755 NA non-coding upstream 79089 1636151 ~ 1636660 (+)
G331747 NA non-coding upstream 106323 1609221 ~ 1609426 (+)
G331746 NA non-coding upstream 114141 1601376 ~ 1601608 (+)
G331744 NA non-coding upstream 129385 1585698 ~ 1586364 (+)
G331793 NA non-coding downstream 2106 1755457 ~ 1756978 (+)
G331840 NA non-coding downstream 102480 1855831 ~ 1856934 (+)
G331820 NA non-coding downstream 153068 1906419 ~ 1909070 (+)
G331824 NA non-coding downstream 245093 1998444 ~ 2057885 (+)
G331767 NA other upstream 52494 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 290043 1424968 ~ 1425835 (+)
G331615 NA other upstream 469176 1246291 ~ 1246573 (+)
G331487 NA other upstream 793616 917735 ~ 922133 (+)
G331470 NA other upstream 799212 913392 ~ 916537 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 590070 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 815416 2548934 ~ 2577790 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025120 si:ch211-8c17.2 coding NC_007114.7 CM002887.2 12828824 ~ 12832519 (+)
grasscarp (Ctenopharyngodon idella) G23246 NA non-coding CI01000003 null 1508250 ~ 1508470 (+)
eurasian perch (Perca fluviatilis) G19218 NA non-coding NC_053113.1 CM020910.1 24159641 ~ 24160087 (+)