CI01000113_02604593_02611740 (GID4, CQ039)


Basic Information

Item Value
gene id CI01000113_02604593_02611740
gene name GID4, CQ039
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2604533 ~ 2611990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02604593_02611740.mRNA
AGCCAATGAGCATCCAGAGTCATTGTTCCTTAATGCCCGTCATCTAATCAGAGAACAGCATGCTGGATCACATGACTCGCTGTTGAGCGCCTTCATTCTGCTCTGAGGGACGTAACCGCGCGTCCTGCGGGAGAAACTCCGAAACTCACGCACTGCGCTGTCAGTGTCGCGTTTTCTTCTCTTCCAGGGTCTCGGATAAGTGACGCTCAGCTGGTTGTGCTCGGGGACTTCCCCGCAGAAGCGATCAAACATGCCGGTCCGTACCGACTGCTGTCAGGGCTCGTCGTTGGCCTGCATGGCCTCGGCCTCTCTCGTTCCGCCCCCGCCGATCAATACCCATCAGCCCGGCGTCAACACCTCTCTACTCTACAGCGGCTCCCAGTTCCGCGGGCACCAGAAGAGCAAAGGAAACTCCTATGATGTCGAGGTGGTTCTGCAGCATGTGACCATGGAGGACTCGTACCTGTGTGGATATCTCAAGATCAAAGGTCTGACAGAGGAATATCCCACCCTTACTACATTCTTTGCTGGGGAGATCATAAGCAAGAAAAGGCCTTTTTTAACCAGGAAATGGGATGCAGATGAGGATGTTGACCGAAAACACTGGGGGAAGTTTCAAGCATTTTATCAGTACGCAAAAAGCTTTAATTCAGACGATTTCGACTATGAAGAACTAAAGAACAGTGACTATGTCTTCATGCGGTGGAAGGAGCAGTTCCTAGTTCCAGATCACACAATCAAAGACATCAGCGGTGCTTCCTTCGCTGGCTTCTACTACATCTGTTTCCAGAAGTCTACAGCCACCATAGAGGGTTACTACTACCACAGAAGCTCTGAATGCAAGAGGGTGAATCTGCAGTGGACAGAGGAAATGGACATGAGTGAAAGAGAGGAACTGTCTAATGATTACGCCAAGGACTCGGCTGTCCTCTCCCCTCAAAGAACGATTAAAATGGAGGTACAGATGATGGAGAACTCTTTCAAGAGACTGTACACAGGCCGATCAAGCGAGCGGGAATCGGGGATTCGCAGCAGTGTTAGCGTTTTGGTTTTTCCTTTTAAGTTTCTGAGTTTTTAATGCTTCTGTCCTCCGGTCATCTTAGAAAACCATTTTTATCCTTAAGGTTTGGGGATTAAA

Function

symbol description
gid4 Orthologous to human GID4 (GID complex subunit 4 homolog).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02604593_02611740.mRNA True 1138 mRNA 0.49 6 2604533 2611990

Neighbor

gene id symbol gene type direction distance location
CI01000113_02585185_02588728 NOXO1 coding downstream 15736 2584692 ~ 2588797 (-)
CI01000113_02542996_02548587 SCO1 coding downstream 55946 2542996 ~ 2548587 (-)
CI01000113_02491883_02493061 NFIL3-6 coding downstream 110958 2490653 ~ 2493575 (-)
CI01000113_02479865_02481505 NA coding downstream 121007 2478817 ~ 2483526 (-)
CI01000113_02356565_02370009 NA coding downstream 234524 2356565 ~ 2370009 (-)
CI01000113_02614236_02620012 NA coding upstream 2236 2614226 ~ 2620012 (-)
CI01000113_02719034_02729100 RAI1 coding upstream 106752 2718742 ~ 2729100 (-)
CI01000113_02791507_02858943 FAM20C coding upstream 178568 2790558 ~ 2859353 (-)
G332978 NA non-coding downstream 4764 2599558 ~ 2599769 (-)
G332977 NA non-coding downstream 5413 2598836 ~ 2599120 (-)
G332975 NA non-coding downstream 12051 2592283 ~ 2592482 (-)
G332974 NA non-coding downstream 13907 2590162 ~ 2590626 (-)
G332962 NA non-coding downstream 27531 2568653 ~ 2577002 (-)
G332931 NA non-coding upstream 84235 2696225 ~ 2696794 (-)
G332940 NA non-coding upstream 91405 2703395 ~ 2704698 (-)
G332945 NA non-coding upstream 135766 2747756 ~ 2755692 (-)
G332937 NA non-coding upstream 174327 2786317 ~ 2788496 (-)
G332837 NA other downstream 353320 2250845 ~ 2251213 (-)
G332649 NA other downstream 455975 2147214 ~ 2148558 (-)
G332160 NA other downstream 2157696 390227 ~ 446837 (-)
G332210 NA other downstream 2555048 47990 ~ 49485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025900 GID4 coding NC_007114.7 CM002887.2 62140077 ~ 62149828 (+)
grasscarp (Ctenopharyngodon idella) G11484 NA non-coding CI01000000 null 17875312 ~ 17875608 (+)
mexican tetra (Astyanax mexicanus) G9343 gid4,LOC107724729,LOC106601817,LOC107555661 non-coding NC_035898.1 CM008301.1 9822309 ~ 9832303 (-)