G332173


Basic Information

Item Value
gene id G332173
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 240390 ~ 294222 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU377634
TTCGTATTTACTGAGAATAGTAAAAACAGTGAAAGGACACTTGATCAAGATAAACATTTTTTAGTTGTTTACACAATTCTCTTATAAATGTAACCAGTTGCTGTGTGACTATGACTGGATGATTGTTAAATATTGCTGGGAAGTTAAAAGTAAATGCACTTATATAATTTGACTGTATATGGTGACACTTGTTTCATGTCAACAAACGGACAGCTAGATAAATGATATTGCTATTACACGCTAGTTGTTATTCTTATTTGAGAATCTCATCCATTTAAATGAGCTCTTTTCTGCTTACAGTGGAAACTGCTACAAAAGGAACAGAAAACAACAGATAAGGGCCGATGGTGTCAAGTGCTAATTTCCTTTTTAAGAGTGCACAATTTTTATATCTATAAAAGTTGTACATGCTAAATTGTAGGTACACATACTGTACACAAACACACAAAAACTCACACACACACACACACACACACAGACAGTGGAATGGACGAGAAACTTTTGCTGGAAGAGGAGACATCAAATTCATGGCATTTACTTCAGTTCAGAGGAGGGAGGAGAAGATCCCAGAATAGGAGACTTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU377634 True 585 lncRNA 0.35 2 240390 294222

Neighbor

gene id symbol gene type direction distance location
CI01000113_00122344_00130639 ELAVL3 coding downstream 109683 121854 ~ 130707 (-)
CI01000113_00077172_00080517 NA coding downstream 159873 75223 ~ 80517 (-)
CI01000113_00301490_00302258 NA coding upstream 7186 301408 ~ 302281 (-)
CI01000113_00308045_00308457 HBBE2, HBBE1.1 coding upstream 13682 307904 ~ 308514 (-)
CI01000113_00324040_00324756 HBAA1 coding upstream 29729 323951 ~ 324804 (-)
CI01000113_00332256_00333023 NA coding upstream 37949 332171 ~ 333055 (-)
CI01000113_00355640_00360687 MPG coding upstream 61054 355276 ~ 360820 (-)
G332283 NA non-coding downstream 1337 237050 ~ 239053 (-)
G332264 NA non-coding downstream 29532 209581 ~ 210858 (-)
G332231 NA non-coding downstream 156547 83542 ~ 83843 (-)
G332230 NA non-coding downstream 156929 82937 ~ 83461 (-)
G332229 NA non-coding downstream 158274 81900 ~ 82116 (-)
G332312 NA non-coding upstream 79795 374017 ~ 374294 (-)
G332313 NA non-coding upstream 80264 374486 ~ 374692 (-)
G332344 NA non-coding upstream 153728 447950 ~ 448335 (-)
G332346 NA non-coding upstream 157926 452148 ~ 452348 (-)
G332347 NA non-coding upstream 158533 452755 ~ 453096 (-)
G332210 NA other downstream 190905 47990 ~ 49485 (-)
G332160 NA other upstream 96005 390227 ~ 446837 (-)
G332649 NA other upstream 1852992 2147214 ~ 2148558 (-)
G332837 NA other upstream 1956623 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 2073394 2356565 ~ 2370009 (-)

Expression


Co-expression Network