G337673


Basic Information

Item Value
gene id G337673
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 1273464 ~ 1276036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU384055
TAAAATATCTAGCTTTCTCATTCCGTATTCAACTTATGAAGAAAGTGTAAAACTTTTGCAGTTCAAAAAGCTTATGCTAGGTCCTACGCCTTCCCTATTCAACTTACGGAAAAAGCTAAACTGACGCGATGCCAGTTCCATTTTTTTATGTTTAAGTTGAATACAGAAGGCGGTCTGGCGGAAGCTAGATATTTTACTTCAAAACTTGTTAAATATGGATATTTTTTTTTCCACACGAATGCATCTCTTCACTTCAGAAGGCCTTTATTAACGCCCCGGAGCCGTGTGGAATATGTTTATGATGGATGGATGTGCATGGAAGCACTTTCTTCAGCTCATACTCATTGGTCCCATTCACTGCTATTATAAAGCTCGGATGCGTCAGGATATTTATTAATATAACTCCGATTGTGTTCATCAGAAAGAAAAAAGTCATATACACGTAGGATGGCTTGAGGGTGAGTGAAGCTTGGGGTAATTTTCATCTGAAAGTGAACTAATCCTTTAAACAGTAGCCAGTGAACCAAATATGCTGTCCTTTTTAACAACGGTACATTTTAACAGCAAAATCAGCCCTTGACATTCATCAGTGGTTGTGGCTTTTTGTTTTGAAGAGCTTGTTCAACATGGGCCCATTGTCTCTATCTCCTAACCACTGAGAGCTACAGAACTGTTCTCAGATCAGTATTAGTGCAACATCCTCCCCCATAACGCTCACTGGAGTCATTTGCTTTGCTATAGATTCACTGCGTTCTCTCCTGGGAGNNNGAGACTTCAGAATGTGCATGGCCCTATATCCCACAGGCTTTTACATACTCTGGAAAGAGAGTAAAAAAAGAAAGGCAGTTGTTCATTCTCATTAGTAATGTTTGTCAAACAGCTGGGTATGCTTTCCTCTTGAGAGAGAGATAGAGAAAAGGAGCAGGGGAAATGTGAACCCAAATGCCCTTGTTTTAAATCCCCAGAAGCAGTCTGACTTCCTCTCTTTGAATGGAAGCTTGGCTGTATTTAGACAAAGTGCAAAAAAACTCTTTTCCTTCATACTCAAGACAACGTTCTTTCTGCACTTCGATCTGGGACACGTTTTACGTGCATCGGTAGGATGATAAAGAGTGTACTCACAACCGCTTCGGAAAAGGAGTGCAGGTTTGTCATCATTAGTCAGCTGAGAATTTAAAGTAGGACTAAGTAAAAATAGGGGATCATACGATGGAAAATTTCATGCTTCCAGACAGGAAGTGAGCACTGAAACACTCCTCCGAAGGTGGACAGAATTGGTTCTATTATGTCTTTGTGGGAATCGTGTGTGTGTGAGACATGTTTTCTCACACACTCACTTCATTAGTGAGCACTGGTCCCCAACAGAGCCCCACATGTCTCAAATGTGTTTGTGTGTGTGAACGGTACATGGAGCCGCCTTGAGGCTCTCCCCAGACAATCTGCTGTCTTGTCAGCTTTTGTATGTGACACATTTCTTTAGCTGTTTCCATCTGTTAAAACCTTGTCATAGGCCACATCATGTCATGAATCATGATTGTCTGCCCTGTATAATGGCTATTAAATCACTTTTATTCAGCACAAAAAAGGACTGAAGCCATGATTGTTATGTGGCTTTATTTGTTTCTCTCTCTCTCTCTCTCTCTCTATATATATGGTTTAAAGGAATAGTTATCCAAAAATGAAATTATCCCATAATTTACTCATCCTCAAGCCATTCTACGAAGGGAAATTTTTTTGCATTTTAAGTAGGTAAATCTGCCAAAAGTTTGTTTTGTCAACTTGTAGGAGTATACTCTAGCATATAGCTAGCCTAAAAGCTAATGCAAACTAAAAGCGACAAAACTTTGATTTAAATTTCATGGGTCTTTAAAGGAATAGTTCACCCAAAAATGAAAATTATCCCATAATTTACTCAGCCTCAAGCCATCCCATGTGTATATGACTTTCTTCTTTCTGATGAACACAATCAGAGTTATATTAAATATTATAAAACAGTTGGTTCCTGTCCTTGATTCTGATTGGTCAATAGCTGTGTTTTATTCACAATAAAACACGGCTATGACTGCTTCACCCAAAGGTTCAGTGTATCACTACACAACACTCTTAGCAACCACTCTTAGCGATGTAAACTGTTTGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTGAGAAAGATCGAGTGAGTGAGTTTATTACTTGCATTCAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTCATAATAAAACATCTGTTTAAATGTCTGATGTATTGTCTTGCCCTTTTAACAGTTAAGGGGTTTTCCCATGACTGACAGCAATAGTCAAAGCATTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU384055 True 2359 lncRNA 0.39 2 1273464 1276036

Neighbor

gene id symbol gene type direction distance location
CI01000119_01250861_01260985 NA coding downstream 12387 1249506 ~ 1261077 (-)
CI01000119_01195573_01235466 NA coding downstream 37925 1193810 ~ 1235539 (-)
CI01000119_01185695_01186597 NA coding downstream 85471 1185336 ~ 1187993 (-)
CI01000119_01161178_01175649 SH3PXD2AA, SH3PXD2A coding downstream 96807 1160480 ~ 1176657 (-)
CI01000119_00939473_01062625 CFAP58 coding downstream 210839 939311 ~ 1062625 (-)
CI01000119_01277614_01286844 NA coding upstream 1540 1277576 ~ 1286844 (-)
CI01000119_01289193_01294766 LRRC58A coding upstream 13019 1289055 ~ 1294766 (-)
CI01000119_01297333_01303971 FSTL1A, FSTL1B, FSTL1 coding upstream 21195 1297231 ~ 1303971 (-)
CI01000119_01319695_01320873 GJA8, CX44.1 coding upstream 42747 1318783 ~ 1321201 (-)
CI01000119_01346109_01356546 BCL9 coding upstream 69145 1345181 ~ 1356546 (-)
G337674 NA non-coding downstream 46568 1216613 ~ 1226896 (-)
G337687 NA non-coding downstream 66345 1205986 ~ 1207119 (-)
G337645 NA non-coding downstream 200529 1072681 ~ 1072935 (-)
G337491 NA non-coding downstream 653574 619517 ~ 619890 (-)
G337486 NA non-coding downstream 660345 612802 ~ 613119 (-)
G337675 NA non-coding upstream 38506 1314542 ~ 1315769 (-)
G337688 NA non-coding upstream 103413 1379449 ~ 1450252 (-)
G337680 NA non-coding upstream 142391 1418427 ~ 1426429 (-)
G337679 NA non-coding upstream 154001 1430037 ~ 1432642 (-)
G337754 NA non-coding upstream 227209 1503245 ~ 1503707 (-)

Expression


Co-expression Network