G346486


Basic Information

Item Value
gene id G346486
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000133
NCBI id null
chromosome length 2254871
location 2241853 ~ 2243321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU394398
GCAGCGGTAACGATGGCTCTCTTTAATCGCCATATATCTCTGTAATCTTTAACCTTGCAATAGCATCGCTTTTTCACTCCATACCCAAGACCATGAAACCTGTGGGCAAACGAACTTCTTGTCTTCAGAGTCATGTGAGGGAAGGGAGTTTATCTGACTGTCAAAACACTAAAAACATGTTGAGGACAGTACAGTGAAAAAGCGGCTGCAGGAAAAGTTACAGCAGCAGTTTGTGAAGATTCAAGTAAATTGAACGAGTATTGTGTGCGCAATGGAGTCCACACCCTCACTCAAAACCAGATCATATTTGTCATGTTCACAATCAGGCAGCTCCTCTACAAATGATGCAGCTGCAATGGCCAGAGCAAAAGCTGAAGCAGCCAAAGCACGTTTAATGTATGCAGATGAGGAGGAAAGAATAAAGGTGGAGAAAGCCAAATTGGAGGCAAAAATGGATAAAATGGTGTTAGAGAGAGAAACTGCTGCAGCCGTAGCCGAGGCAGAAGCTCTAGAAGCAGCTGTTGACACCAGCGTCCATAGTAAACATGATCCTCCACTGGAAACAGCTCCTGTTGATGTTATGCAGCGGACATGTGAATACGTTGAACAGATGAATCTACATGCAGTCACAAAATCAGCATCAAAAGCAGAACCACTCCCTCCAGATGAAACCATACAGCCTCACACAGAGTTACCTGTCAGAAATTCCATTCCTGCGTTCCACACGTTTCAAGGCAGAGAGTTGCTCAGATGACGCTGAATTTTATCATATGCAACCAAGAAAAGATTCTGCTCAACCATCACAATTCTCACCAGCCATGAATCATCCTTCTGGCAACACTCATGACGATAACCAGTGCAGAAGGCACACACGTTTAGCCCAAAGCAGCACACCTCCTTTCCAAATGGCAAGTCCAACACTTCAACCTTCCCAACAAGCAAAGACAGACATTTCAGACTTTTCAGATATTTTGCTCGCCGTGAACTTCTTAACTGGTTTAATACAGTTCAATGACCAACCAGAAAGCTTCAGGGCCTGGCAGCGGTCCTTTCAAAATGCTGTAAGTGGTTTGAACTTGACACCTAGTGAAGAAATGGACTTGTTAGTCAAATGGTTGGGAAAAGAATCAGCTGAGCACGCTAAACGCTGTAGGATTACAAATTTAAGAATCTGTTTAAGATCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU394398 True 1184 TUCP 0.44 2 2241853 2243321

Neighbor

gene id symbol gene type direction distance location
CI01000133_02206759_02208480 NA coding upstream 32953 2206759 ~ 2208900 (+)
CI01000133_02203009_02203420 NA coding upstream 38064 2203009 ~ 2203789 (+)
CI01000133_02186666_02199197 NA coding upstream 42636 2186666 ~ 2199217 (+)
CI01000133_02162924_02165616 NA coding upstream 75593 2162845 ~ 2166260 (+)
CI01000133_02131847_02138383 NA coding upstream 103370 2131847 ~ 2138483 (+)
G346485 NA non-coding upstream 91 2241432 ~ 2241762 (+)
G346479 NA non-coding upstream 7259 2234363 ~ 2234594 (+)
G346478 NA non-coding upstream 7613 2234005 ~ 2234240 (+)
G345940 NA non-coding upstream 18465 2222689 ~ 2223388 (+)
G345926 NA non-coding upstream 41696 2199876 ~ 2200157 (+)
G344985 NA other upstream 2094672 142772 ~ 147181 (+)

Expression


Co-expression Network