XLOC_011572 (ACBD3)


Basic Information

Item Value
gene id XLOC_011572
gene name ACBD3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33375469 ~ 33386590 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023039
TTTCGCATGTTTCCCTTGCAGCTGCAAGCTTTGCTAAAAAAGCAAAAGCGGTTTAAACGAGCTGAAAATAACAGAAATATCCGGGATTTCCGGTAGGAATACACGGAAGAGAAGTGTTTTGAGCGCTACGTGGCCACCTGTGACTGCAGCAGCACGGTAGGAGCGTAAGAGCGGACTGACAGTTTGACATGATGGAGTTTGACGGAGAAGATCAAGGCAGCGACCGGCTCGAGAAAACCTCCTCCGAGAACGGCATTAACACCGAAACACACGCGCTGGACACCCAAGAAGACCATAAAACATGTCAGGATAACGAAACACCGCAGAAGTCATGGAGTTTGGACAGAAACTGGGGGTTTACTTTAGAGGAGCTCTTCAGACTTGCGCTGAAATTCTTTAAAGAGATGAATGGAAAGGCTTTCAACCCAACATATGAAGAAAACCTTCGTTTGGTTGCACTACATAAGCAAATCACTCTCGGCCCTTATAATCCAAACAGCTGTCCAGACATTGGCTTCTTTGACGTACTGGGAAATGACAGAAGGAAAGAATGGCTTTCCCTGGGCAGCATGGCCAAAGAAGACGCCATGGAGGACTTTGTGAAGCTTCTGAACTCTTGTTGTAGTTTGTTTGCACCATATGTGACGTCACATAAAATTGAGAAGGAGGACCAAGAGAGGAGACAAAAAGAAGAGGAAGAACGTCTCAGGCTGGAGAGAGAAGAGCAGGAGAGACGACGGCTGGAAGAAGAAGAACGGCGCAGAGAAGAAGAGGAGAGAAGGGCAATAGAGGAGGAACAGAGAAGGAAAGAAGAGGCACAGAGGTTACAGATAGAACGGCAAAAACAGCAGATCATGGCTGTTCTGAATGCACAAACGGCAGTGCAGTTTCAACAGTATGCCAAACAACAGTATCCAGACAATCCAGAGCAGCAGCAGTTACTGATCAGACAACTGCAGGAACAACACTTCCAACAGTACGTCCAGCAGGCTCTCCGCTTACAGCAGATGGCCTCACAGAAACAGCAGGAAGAATCAACTGTGATTCAGACATCAGAAGCTCTTCCTGCTCCTATTTCTAACGAAGCAGTGTCCATCTGCAACCCCAACAGCCAATCAAATTCATTAGACAATCACAAACAACAGAAAGACCAAAAAAACTCCCATTTGGTTGTAGAAGGGGAAACAGGAGTAGTACCTATCGTGGCTCCCTCAATGTGGACTCGGCCTCAAATAAAGGAGTTTAAGGAAAAGGTTCTGCACGATGAGGACTCTGTCATCACAGTGGGCCGAGGGGAAGTGCTGACCATCCGAGTTCCCACTCATCCTGATGGCTCATACCTGTTTTGGGAATTTGCCACCGATCACTATGATATCGGTTTTGGGCTGCACTTCGAGTGGAAGGACTTGACCGCACCGACAAGCAGCAATAATGGAGGAGAATCTACTACTGAAACCAAAGAAGGCACAGCACAAGCCGAAGAAGAGAAAACTGAACAAGGCAGAATTCCTCTGGTTAATGAAGTGGCTCCTGTTTCTCGTCGGGACAGCCATGAGGAAGTTTACGCAGGCAGTCATCAGTATCCCGGTGAAGGAGTTCATCTTCTCAAATTTGACAATTCCTACTCCCTCTGGAGGCCAAAGGTTGTGTATTATAGAGTTTATTACACCAGATAAACATCAGCTGGTCATGTGCCTCATA

Function

symbol description
acbd3 Predicted to enable fatty-acyl-CoA binding activity. Predicted to be active in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3).

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG:

id description
ko05132 Salmonella infection

ZFIN:

id description
ZDB-GENE-040426-1930 Predicted to enable fatty-acyl-CoA binding activity. Predicted to be active in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3).

Ensembl:

ensembl_id ENSDARG00000024602

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023039 True 1701 mRNA 0.47 8 33375469 33386590

Neighbor

gene id symbol gene type direction distance location
XLOC_011571 xdh coding upstream 931 33340675 ~ 33374538 (+)
XLOC_011570 si:ch211-132f19.7 coding upstream 35843 33311784 ~ 33339626 (+)
XLOC_011568 dnajc27 coding upstream 65780 33296436 ~ 33309689 (+)
XLOC_011569 BX323819.1 coding upstream 76999 33298348 ~ 33298470 (+)
XLOC_011567 pomca coding upstream 145430 33226955 ~ 33230039 (+)
XLOC_011573 snap23.1 coding downstream 28729 33415319 ~ 33433097 (+)
XLOC_011574 snap23.2 coding downstream 46976 33433566 ~ 33441020 (+)
XLOC_011575 rin3 coding downstream 67099 33453689 ~ 33486030 (+)
XLOC_011576 pth2 coding downstream 108604 33495194 ~ 33499023 (+)
XLOC_011577 BX957235.1 coding downstream 198756 33585346 ~ 33585462 (+)
XLOC_011565 NA non-coding upstream 253673 33120580 ~ 33121796 (+)
XLOC_011564 NA non-coding upstream 254959 33118538 ~ 33120510 (+)
XLOC_011563 NA non-coding upstream 264303 33102503 ~ 33111166 (+)
XLOC_011562 NA non-coding upstream 504653 32780702 ~ 32870816 (+)
XLOC_011582 NA non-coding downstream 882530 34269120 ~ 34287056 (+)
XLOC_011583 NA non-coding downstream 1247508 34634098 ~ 34675436 (+)
XLOC_011587 CR556709.1 non-coding downstream 1892198 35278788 ~ 35288741 (+)
XLOC_011590 NA non-coding downstream 2169722 35556312 ~ 35557562 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_03500344_03507001 NA coding CI01000062 null 3499927 ~ 3507331 (-)