XLOC_011580 (mpp5a)


Basic Information

Item Value
gene id XLOC_011580
gene name mpp5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 34186632 ~ 34239514 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023061
cagtcccgAGCCTGAAACAGTCGAGCCGTAGCGACCCGTCACATAACATGACAACAATATAACGTGCCATTCTGTGAACAAAACCGCCTGTTTGGAAGTATTTATACGCTTAGTGGACATAAAGGACGGCATATGTGACTACAGAGTAAGGCCAAGGAGTGACAGACCTTTAGCATTCAGAGGACGAGAGGAAGCAGACAAGCCAGCACTGACGACAGAGGACACCCTGCTACACTCTGGAGTTCTTATTCTGGGCTGACTGGCAAACACGGGTGTGGCTCAGTGTCTGGAGCCGCTGCTGACCTCAGCCCTGCTGTCATGGCCTCAGCCCTCACACCATGCAGAAAGCACCCCTCCTAACCCTCATACCTCACACACACTTGCACCACACACCACCACACATGCGCGCAGCCATGATGACCACCTCCCACATGAACGGATATGTGACCGAGTCAGATGGCGGGGGAGGTACTGACATCGTGGAAGAGGGGGTGCAGAGGCACAGGGAGATGGCGGTGGACTGCCCAAGTGAGCTGGGTGCCCGCACCCTGCCCGTCAGACGCAGCGCTCAGCTGGAAAAGATCCGCCAGCAGCAGGAGGACCGCAGAAGACGAGAGGAGGAGGGCCGCAGCCGGCAGGAGCTTGACCTCAACTCGTCCATGCGCCTCAAGAAACTCTCCCAGAACCCAAAAGTGGGCATCGATAACCCCACCTTTGAGCAAATGGAAGGTCCTGGTGGCTCCGCAGGTGGTCTTCAGAGCCTCATCGCACCACCAGCTTTACTAGAGCTGGAGGACCTGTTGATGTCCCTTAAGCAGGTGCAGCATAATTTGAATGACTCTCAAAGTCAAGAGGACGTGGAGCTGGTTCTACAGCTGGTCCAGAAGCCTGACTTCCAGAAAGCCTTCAGCATTCACAACTCTGTGGCCCACTATATGAACCGGCCCAGCCCCCCCTACCCCCTGACGGATCACGCACAGACCCTGGCTCAAGAGGTGGAGGTCATGGTGCAAAACAGCTCACACAAGGAAGGACTTGAGCTAAGCAGCCTGCTCTCAACGTCCCACATGCAGGCGCTCATGATGGCACATGACAGCGTGGCTGAACAAGAGATGCAGCTGGAGCCTCTTGTTCCTTCTGTCAATGCAAGCGAGACTCTCACCCAGTGGGGAGGAGAGACTGTCAAAATTGTACGGATTGAAAAAGCCAAGGACATCCCATTGGGAGCGACTGTTAGAAATGATATGGACAGTGTGGTCATCAGCCGGATTGTTAAAGGGGGGGCGGCAGAACGCAGCGGCCTGCTACACGAAGGAGACGAGATCCTGGAGATCAACGGTGTGGAAATCCGTGGCAAAGATGTCAACGAAGTCTTCGACATCctggcGGACATGCATGGTGTACTGTCTTTTGTTCTCATCCCCAGCGCACAGATCAAATCTCCTCCTATTAAAGAGACTGTGGTACATGTGAAGGCACATTTTGACTATGACCCCTCAGATGACCCATATGTGCCATGCCGAGAGCTCGGCCTGTGCTTTCAGAAGGGGGATATACTCCACATAATCAGCCAAGACGACCCCAACTGGTGGCAGGCCTACAGAGATGGGGATGAAGACAACCAGCCTCTTGCTGGCCTCGTCCCTGGCAAAAGTTTTCAGCAGCAGAGGGAGGCAATGAAGCAAACCATAGAAGAGGATAAAGAGCCTGAAAAATCAGGAAAGCTTTGGTGTGCTAAAAAGACCAAGAAGAAGCGGAAGAAGATGCAATACAATGCTAACAAAAATGATGACTTTGATAATGAGGAGATTCTCACATATGAAGAAATGGCACTTTACCACCAACCAGCCAATCGTAAGCGGCCCATCGCACTAATCGGCCCACCGAACTGTGGGcaaaatgagctcagacaaaGACTCCTCTCCACTGAGCCGGACAGGTTTGCTGGACCTGTTCCTCACACCACACGGAGTCGACGTGACGCTGAGGCGAACGGCCGTGACTACCACTTTGTGTCCCGCCAGGCCTTCGAGATGGACTCTGCAGCAGGGAAATTCATAGAGTCCGGAGAGTTTGAAAAGAACTTTTACGGCACCAGCACAGACTCTGTCCGACAAGTCATCAACACAGGCAAAATCTGCCTCCTGTGCGTACACACCCAGTCTTTGAAGGTGTTGCGCAGCTCGGACCTCAAGCCCTACATCATCTTCATCGCTCCTCCATCCCAAGAGCGATTGAGAGCCCTCTTAGCTAAAGACAACAAAAACCCAAAGCCCGAGGAGCTGCGAGACATTATCGAGAAGGCCCGAGAGATGGAGCAGAACTACGGCCACCTGTTTGATGCTGCCATTGTGAACACCGACCTGGACAAATCCTACCAGGAGCTGCTGCGTCTCATCAATAAACTAGACACTGAACCCCAGTGGGTCCCTTCATCCTGGCTGCGCTGAGATGGGTGAAAATGAAGAGCACGTTGTTTATCAATGCTTTAGAATGCCTctgtttttcttgttttcttcTCCTCACTCATAGATAAGGACACTATACGCGCCCTCAAGCCCGCACAGAAGTGTCTGTCTGCACTACACTGTCGGCAGGCTGAGGGAATGAGAGTTTTAATGTCATAACTTGTGTTTTCGAGTCCGGTTATCCACATTCCAGTGAGAAAGTTACCAGCACTTGGTGCAGCAGTAGAATTAGGGCTTCTATACTGCTTTTGATAACTATTTATGATTGTAAATAttctatatgtatttttaaagatGGATTTGGACAAATGCAGAGGTGGGACAAGATAGCTGGAAGTCAGCATTTTTCAAGAGATCTATTCAGACTCCAGAACGGACATTCGTACACTCTGTTCTCTTCTCTTTCATCCTTAACCTCTACAATGTTACAAGAACATCCTGCGTCTGAACAACTCTTCCAGGACACTAAATGGGATGAAAGTGGAAGCGAGCGATGCCTTTTTGTCCCTTCAGTGTTATGGCGAAGCAGCACTGCGATTGTGACAGAGTTTAAATACGAATAAACTTCAGGTTTTCTTCC
>TCONS_00023062
TAAGGCCAAGGAGTGACAGACCTTTAGCATTCAGAGGACGAGAGGAAGCAGACAAGCCAGCACTGACGACAGAGGACACCCTGCTACACTCTGGAGTTCTTATTCTGGGCTGACTGGCAAACACGGGTGTGGCTCAGTGTCTGGAGCCGCTGCTGACCTCAGCCCTGCTGTCATGGCCTCAGCCCTCACACCATGCAGAAAGCACCCCTCCTAACCCTCATACCTCACACACACTTGCACCACACACCACCACACATGCGCGCAGCCATGATGACCACCTCCCACATGAACGGATATGTGACCGAGTCAGATGGCGGGGGAGGTACTGACATCGTGGAAGAGGGGGTGCAGAGGCACAGGGAGATGGCGGTGGACTGCCCAAGTGAGCTGGGTGCCCGCACCCTGCCCGTCAGACGCAGCGCTCAGCTGGAAAAGATCCGCCAGCAGCAGGAGGACCGCAGAAGACGAGAGGAGGAGGGCCGCAGCCGGCAGGAGCTTGACCTCAACTCGTCCATGCGCCTCAAGAAACTCTCCCAGAACCCAAAAGTGGGCATCGATAACCCCACCTTTGAGCAAATGGAAGGTCCTGGTGGCTCCGCAGGTGGTCTTCAGAGCCTCATCGCACCACCAGCTTTACTAGAGCTGGAGGACCTGTTGATGTCCCTTAAGCAGGTGCAGCATAATTTGAATGACTCTCAAAGTCAAGAGGACGTGGAGCTGGTTCTACAGCTGGTCCAGAAGCCTGACTTCCAGAAAGCCTTCAGCATTCACAACTCTGTGGCCCACTATATGAACCGGCCCAGCCCCCCCTACCCCCTGACGGATCACGCACAGACCCTGGCTCAAGAGGTGGAGGTCATGGTGCAAAACAGCTCACACAAGGAAGGACTTGAGCTAAGCAGCCTGCTCTCAACGTCCCACATGCAGGCGCTCATGATGGCACATGACAGCGTGGCTGAACAAGAGATGCAGCTGGAGCCTCTTGTTCCTTCTGTCAATGCAAGCGAGACTCTCACCCAGTGGGGAGGAGAGACTGTCAAAATTGTACGGATTGAAAAAGCCAAGGACATCCCATTGGGAGCGACTGTTAGAAATGATATGGACAGTGTGGTCATCAGCCGGATTGTTAAAGGGGGGGCGGCAGAACGCAGCGGCCTGCTACACGAAGGAGACGAGATCCTGGAGATCAACGGTGTGGAAATCCGTGGCAAAGATGTCAACGAAGTCTTCGACATCctggcGGACATGCATGGTGTACTGTCTTTTGTTCTCATCCCCAGCGCACAGATCAAATCTCCTCCTATTAAAGAGACTGTGGTACATGTGAAGGCACATTTTGACTATGACCCCTCAGATGACCCATATGTGCCATGCCGAGAGCTCGGCCTGTGCTTTCAGAAGGGGGATATACTCCACATAATCAGCCAAGACGACCCCAACTGGTGGCAGGCCTACAGAGATGGGGATGAAGACAACCAGCCTCTTGCTGGCCTCGTCCCTGGCAAAAGTTTTCAGCAGCAGAGGGAGGCAATGAAGCAAACCATAGAAGAGGATAAAGAGCCTGAAAAATCAGGAAAGCTTTGGTGTGCTAAAAAGACCAAGAAGAAGCGGAAGAAGATGCAATACAATGCTAACAAAAATGATGACTTTGATAATGAGGAGATTCTCACATATGAAGAAATGGCACTTTACCACCAACCAGCCAATCGTAAGCGGCCCATCGCACTAATCGGCCCACCGAACTGTGGGcaaaatgagctcagacaaaGACTCCTCTCCACTGAGCCGGACAGGTTTGCTGGACCTGTTCCTCACACCACACGGAGTCGACGTGACGCTGAGGCGAACGGCCGTGACTACCACTTTGTGTCCCGCCAGGCCTTCGAGATGGACTCTGCAGCAGGGAAATTCATAGAGTCCGGAGAGTTTGAAAAGAACTTTTACGGCACCAGCACAGACTCTGTCCGACAAGTCATCAACACAGGCAAAATCTGCCTCCTGTGCGTACACACCCAGTCTTTGAAGGTGTTGCGCAGCTCGGACCTCAAGCCCTACATCATCTTCATCGCTCCTCCATCCCAAGAGCGATTGAGAGCCCTCTTAGCTAAAGACAACAAAAACCCAAAGCCCGAGGAGCTGCGAGACATTATCGAGAAGGCCCGAGAGATGGAGCAGAACTACGGCCACCTGTTTGATGCTGCCATTGTGAACACCGACCTGGACAAATCCTACCAGGAGCTGCTGCGTCTCATCAATAAACTAGACACTGAACCCCAGTGGGTCCCTTCATCCTGGCTGCGCTGAGATGGGTGAAAATGAAGAGCACGTTGTTTATCAATGCTTTAGAATGCCTctgtttttcttgttttcttcTCCTCACTCATAGATAAGGACACTATACGCGCCCTCAAGCCCGCACAGAAGTGTCTGTCTGCACTACACTGTCGGCAGGCTGAGGGAATGAGAGTTTTAATGTCATAACTTGTGTTTTCGAGTCCGGTTATCCACATTCCAGTGAGAAAGTTACCAGCACTTGGTGCAGCAGTAGAATTAGGGCTTCTATACTGCTTTTGATAACTATTTATGATTGTAAATAttctatatgtatttttaaagatGGATTTGGACAAATGCAGAGGTGGGACAAGATAGCTGGAAGTCAGCATTTTTCAAGAGATCTATTCAGACTCCAGAACGGACATTCGTACACTCTGTTCTCTTCTCTTTCATCCTTAACCTCTACAATGTTACAAGAACATCCTGCGTCTGAACAACTCTTCCAGGACACTAAATGGGATGAAAGTGGAAGCGAGCGATGCCTTTTTGTCCCTTCAGTGTTATGGCGAAGCAGCACTGCGATTGTGACAGAGTTTAAATACGAATAAACTTCAGGTTTTCTTCCA
>TCONS_00023063
CAGGTGTGGCTCAGTGTCTGGAGCCGCTGCTGACCTCAGCCCTGCTGTCATGGCCTCAGCCCTCACACCATGCAGAAAGCACCCCTCCTAACCCTCATACCTCACACACACTTGCACCACACACCACCACACATGCGCGCAGCCATGATGACCACCTCCCACATGAACGGATATGTGACCGAGTCAGATGGCGGGGGAGGTACTGACATCGTGGAAGAGGGGGTGCAGAGGCACAGGGAGATGGCGGTGGACTGCCCAAGTGAGCTGGGTGCCCGCACCCTGCCCGTCAGACGCAGCGCTCAGCTGGAAAAGATCCGCCAGCAGCAGGAGGACCGCAGAAGACGAGAGGAGGAGGGCCGCAGCCGGCAGGAGCTTGACCTCAACTCGTCCATGCGCCTCAAGAAACTCTCCCAGAACCCAAAAGTGGGCATCGATAACCCCACCTTTGAGCAAATGGAAGGTCCTGGTGGCTCCGCAGGTGGTCTTCAGAGCCTCATCGCACCACCAGCTTTACTAGAGCTGGAGGACCTGTTGATGTCCCTTAAGCAGGTGCAGCATAATTTGAATGACTCTCAAAGTCAAGAGGACGTGGAGCTGGTTCTACAGCTGGTCCAGAAGCCTGACTTCCAGAAAGCCTTCAGCATTCACAACTCTGTGGCCCACTATATGAACCGGCCCAGCCCCCCCTACCCCCTGACGGATCACGCACAGACCCTGGCTCAAGAGGTGGAGGTCATGGTGCAAAACAGCTCACACAAGGAAGGACTTGAGCTAAGCAGCCTGCTCTCAACGTCCCACATGCAGGCGCTCATGATGGCACATGACAGCGTGGCTGAACAAGAGATGCAGCTGGAGCCTCTTGTTCCTTCTGTCAATGCAAGCGAGACTCTCACCCAGTGGGGAGGAGAGACTGTCAAAATTGTACGGATTGAAAAAGCCAAGGACATCCCATTGGGAGCGACTGTTAGAAATGATATGGACAGTGTGGTCATCAGCCGGATTGTTAAAGGGGGGGCGGCAGAACGCAGCGGCCTGCTACACGAAGGAGACGAGATCCTGGAGATCAACGGTGTGGAAATCCGTGGCAAAGATGTCAACGAAGTCTTCGACATCctggcGGACATGCATGGTGTACTGTCTTTTGTTCTCATCCCCAGCGCACAGATCAAATCTCCTCCTATTAAAGAGACTGTGGTACATGTGAAGGCACATTTTGACTATGACCCCTCAGATGACCCATATGTGCCATGCCGAGAGCTCGGCCTGTGCTTTCAGAAGGGGGATATACTCCACATAATCAGCCAAGACGACCCCAACTGGTGGCAGGCCTACAGAGATGGGGATGAAGACAACCAGCCTCTTGCTGGCCTCGTCCCTGGCAAAAGTTTTCAGCAGCAGAGGGAGGCAATGAAGCAAACCATAGAAGAGGATAAAGAGCCTGAAAAATCAGGAAAGCTTTGGTGTGCTAAAAAGACCAAGAAGAAGCGGAAGAAGATGCAATACAATGCTAACAAAAATGATGACTTTGATAATGAGGAGATTCTCACATATGAAGAAATGGCACTTTACCACCAACCAGCCAATCGTAAGCGGCCCATCGCACTAATCGGCCCACCGAACTGTGGGcaaaatgagctcagacaaaGACTCCTCTCCACTGAGCCGGACAGGTTTGCTGGACCTGTTCCTCACACCACACGGAGTCGACGTGACGCTGAGGCGAACGGCCGTGACTACCACTTTGTGTCCCGCCAGGCCTTCGAGATGGACTCTGCAGCAGGGAAATTCATAGAGTCCGGAGAGTTTGAAAAGAACTTTTACGGCACCAGCACAGACTCTGTCCGACAAGTCATCAACACAGGCAAAATCTGCCTCCTGTGCGTACACACCCAGTCTTTGAAGGTGTTGCGCAGCTCGGACCTCAAGCCCTACATCATCTTCATCGCTCCTCCATCCCAAGAGCGATTGAGAGCCCTCTTAGCTAAAGACAACAAAAACCCAAAGCCCGAGGAGCTGCGAGACATTATCGAGAAGGCCCGAGAGATGGAGCAGAACTACGGCCACCTGTTTGATGCTGCCATTGTGAACACCGACCTGGACAAATCCTACCAGGAGCTGCTGCGTCTCATCAATAAACTAGACACTGAACCCCAGTGGGTCCCTTCATCCTGGCTGCGCTGAGATGGGTGAAAATGAAGAGCACGTTGTTTATCAATGCTTTAGAATGCCTctgtttttcttgttttcttcTCCTCACTCATAGATAAGGACACTATACGCGCCCTCAAGCCCGCACAGAAGTGTCTGTCTGCACTACACTGTCGGCAGGCTGAGGGAATGAGAGTTTTAATGTCATAACTTGTGTTTTCGAGTCCGGTTATCCACATTCCAGTGAGAAAGTTACCAGCACTTGGTGCAGCA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0021591 ventricular system development biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0045176 apical protein localization biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0035088 establishment or maintenance of apical/basal cell polarity biological_process
GO:0001841 neural tube formation biological_process
GO:0090162 establishment of epithelial cell polarity biological_process
GO:0007420 brain development biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0048699 generation of neurons biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0016332 establishment or maintenance of polarity of embryonic epithelium biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0043296 apical junction complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0005634 nucleus cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020712-1 Predicted to enable ATP binding activity. Acts upstream of or within several processes, including animal organ development; apical protein localization; and morphogenesis of an epithelium. Located in apical junction complex; nucleus; and photoreceptor inner segment. Is intrinsic component of plasma membrane. Is expressed in several structures, including EVL; brain; eye; neural tube; and photoreceptor cell. Orthologous to human PALS1 (protein associated with LIN7 1, MAGUK family member).

Ensembl:

ensembl_id ENSDARG00000006272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023061 False 3048 mRNA 0.51 15 34186632 34239513
TCONS_00023062 False 2903 mRNA 0.51 14 34206167 34239514
TCONS_00023063 True 2421 mRNA 0.53 13 34215886 34239155

Neighbor

gene id symbol gene type direction distance location
XLOC_011579 gphna coding upstream 1119 33999630 ~ 34185513 (+)
XLOC_011578 fut8a coding upstream 280144 33719415 ~ 33906488 (+)
XLOC_011577 BX957235.1 coding upstream 601170 33585346 ~ 33585462 (+)
XLOC_011576 pth2 coding upstream 687609 33495194 ~ 33499023 (+)
XLOC_011575 rin3 coding upstream 700602 33453689 ~ 33486030 (+)
XLOC_011581 eif2s1a coding downstream 4831 34244345 ~ 34254233 (+)
XLOC_011582 NA coding downstream 29606 34269120 ~ 34287056 (+)
XLOC_011583 NA coding downstream 394584 34634098 ~ 34675436 (+)
XLOC_011584 id2a coding downstream 566383 34805897 ~ 34808165 (+)
XLOC_011585 asap2a coding downstream 857510 35097024 ~ 35223482 (+)
XLOC_011569 BX323819.1 non-coding upstream 888162 33298348 ~ 33298470 (+)
XLOC_011565 NA non-coding upstream 1064836 33120580 ~ 33121796 (+)
XLOC_011564 NA non-coding upstream 1066122 33118538 ~ 33120510 (+)
XLOC_011563 NA non-coding upstream 1075466 33102503 ~ 33111166 (+)
XLOC_011587 CR556709.1 non-coding downstream 1039274 35278788 ~ 35288741 (+)
XLOC_011590 NA non-coding downstream 1316798 35556312 ~ 35557562 (+)
XLOC_011591 AL929378.1 non-coding downstream 1675496 35915010 ~ 35915126 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_03033192_03047656 MPP5A, MPP5 coding CI01000062 null 3032647 ~ 3047847 (-)