Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_011593 (CR354585.2)

Basic Information

Item	Value
gene id	XLOC_011593
gene name	CR354585.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	36614315 ~ 36614432 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023075
TTTCACAAACATATCACCCTGCATACCAAGACCGGTTACCCACTGAAGCTAgccagggctgagcctggtcagtatctggatgggagaccacacggGAAAACTAGttttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109707

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00023075	True	118	rRNA	0.50	1	36614315	36614432

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011592	htr1b	coding	upstream	24710	36588281 ~ 36589605 (+)
XLOC_011591	AL929378.1	coding	upstream	699189	35915010 ~ 35915126 (+)
XLOC_011590	NA	coding	upstream	1056753	35556312 ~ 35557562 (+)
XLOC_011589	BX571665.1	coding	upstream	1177093	35431724 ~ 35437222 (+)
XLOC_011588	cmpk2	coding	upstream	1238867	35362851 ~ 35375448 (+)
XLOC_011594	impg1b	coding	downstream	12667	36627099 ~ 36681740 (+)
XLOC_011595	slc30a1b	coding	downstream	601388	37215820 ~ 37221044 (+)
XLOC_011596	hadhab	coding	downstream	613504	37227936 ~ 37252810 (+)
XLOC_011597	CR318625.2	coding	downstream	635304	37249736 ~ 37254266 (+)
XLOC_011598	tmem62	coding	downstream	639274	37253706 ~ 37281313 (+)
XLOC_011587	CR556709.1	non-coding	upstream	1325574	35278788 ~ 35288741 (+)
XLOC_011583	NA	non-coding	upstream	1938879	34634098 ~ 34675436 (+)
XLOC_011582	NA	non-coding	upstream	2327259	34269120 ~ 34287056 (+)
XLOC_011599	CR318625.1	non-coding	downstream	657587	37272019 ~ 37272133 (+)
XLOC_011601	NA	non-coding	downstream	766068	37380500 ~ 37398410 (+)
XLOC_011602	AL929543.1	non-coding	downstream	839244	37453676 ~ 37453807 (+)
XLOC_011605	NA	non-coding	downstream	1051219	37665651 ~ 37668524 (+)
XLOC_011606	NA	non-coding	downstream	1285999	37900431 ~ 37922022 (+)

Expression

Co-expression Network