CI01000154_00902311_00907798 (RHOUB)


Basic Information

Item Value
gene id CI01000154_00902311_00907798
gene name RHOUB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 902054 ~ 907995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000154_00902311_00907798.mRNA
CTATAAAAGCTCCTCTCTCGCTCCTTGCCCAGCTGTTGTAGAGTGTGAGACGTCTGTAGAGTTTCGTGGAGATACTGAGTATCTGGGACTTATGAAACTGACGGTTTATGTGCACAGCAGCGGATCAAGCGCATTTACGCAGTGCTCATAGCGCCAGTCGTTTATAAAGTGCTCTTTTTAATGTTTTTTTCTCGGGTCACTCCATCAGGAGTGTGCGATCCACCTGCGGTCCGGTCGAGCAGCGCGTCTGAACGCACATGGATTACAGTACCCTGATGGCGCCTCCGGTGCCTCCTCACAAACCCACATCCCCCCGGCCTGCGCACTGCGAGGGGCGGCTGCTGAAGTGCGTGTTTCTCGGGGACGGAGCTGTGGGGAAAACCAGCCTGATTGTCAGCTACACGACCAATGGATATCCAACTAAATACGTCCCGACAGCGTTTGACGATTTCTCAGCGGTCGTCCAGGTGGATGGTCAGCCAGTGAGACTGCAGCTTTGTGACACTGCTGGGCAGGTGTCCATGTCAACAAAGGAAAATAGTCGTTGTTTGATAATGATAAAAGCAATCAGACAATGTCTGTGCGTCATGCATTTACTTTTATCTTTCTCTCCACCTCAGGATGAATTCGATAAGTTGCGTCACTTCTGCTACACACGGACTGACGTACTCCTGCTGTGCTTCAGCGTCGTCAGCCCCGCTTCCTTCCAGAACATTGGTGAAAAATGGGTCCCGGAGATCCGACGGCGTTGTCCGCTCACACCTGTGCTGCTGGTGGGCACCCAGTGCGACCTGCGGCAAGACGTCAAGGTCCTCATCGAACTGGCACGGCGCAGAGAGCGGCCTGTCCTGGAAGAGGATGCCCGCGCCCTGGCGGACAAAATAGGAGCGGTAGCCTACGTAGAATGCTCCTCGCTCACACAGAAAAACCTGAAGGATGTGTTTGACGCCGCCATCTCCGTGGGGCTACGACACTCCGACAGAAGAGCCAGACGAGAACGGAAGGTCCACAGTACTGCTGATAAAATGAAAATGCTTTCGAAGTCGTGGTGGAAGAAATATATCTGCATACAGTAGCAAAGATCAAGCCAATCTTCTGAGGCATGAACTATGTGATAGACTCTGGTTTAGCGTCACGCTCCTCAAGTGGATGATGGTCAGTTGGTAACGAAACAACAATGAACAGTATTGCTGCTGTAAGGACGATGAATGATGACAGAAGGTGCAGCTTGTTCGGTAGCGACAGTACAAAGGAAGTTGCAGGGCCGTTGCTA

Function

symbol description
rhoub Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Is expressed in several structures, including immature eye; nervous system; neural rod; otic vesicle; and paraxial mesoderm. Orthologous to human RHOU (ras homolog family member U).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K07865 RHOU, WRCH1; Ras homolog gene family, member U

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000154_00902311_00907798.mRNA True 1273 mRNA 0.52 4 902054 907995

Neighbor

gene id symbol gene type direction distance location
CI01000154_00887422_00890641 NA coding upstream 11111 887422 ~ 890943 (+)
CI01000154_00776484_00783606 CALML6, CALM2, CALM3, CALM1 coding upstream 118372 776484 ~ 783682 (+)
CI01000154_00753231_00755134 TRAPPC4.S, TRAPPC4 coding upstream 146920 751150 ~ 755134 (+)
CI01000154_00709450_00737541 SACS coding upstream 163810 708287 ~ 738244 (+)
CI01000154_00641532_00674274 GAB2 coding upstream 227780 641532 ~ 674274 (+)
CI01000154_00956115_00973357 RAB4B, MIA-RAB4B, RAB4A coding downstream 47035 955030 ~ 973682 (+)
CI01000154_01001933_01010068 NA coding downstream 93899 1001894 ~ 1010582 (+)
CI01000154_01057020_01083988 ARHGAP35 coding downstream 148789 1056784 ~ 1086056 (+)
CI01000154_01134763_01169402 NPAS1 coding downstream 226768 1134763 ~ 1169416 (+)
CI01000154_01186882_01191062 NA coding downstream 278887 1186882 ~ 1191062 (+)
G361694 NA non-coding upstream 39137 862679 ~ 862917 (+)
G361631 NA non-coding upstream 54812 846718 ~ 847242 (+)
G361628 NA non-coding upstream 65452 836345 ~ 836602 (+)
G361627 NA non-coding upstream 67691 834103 ~ 834363 (+)
G361605 NA non-coding upstream 104277 794129 ~ 797777 (+)
G361670 NA non-coding downstream 59359 967354 ~ 970074 (+)
G361637 NA non-coding downstream 73798 981793 ~ 991232 (+)
G361726 NA non-coding downstream 85392 993387 ~ 993598 (+)
G361728 NA non-coding downstream 86977 994972 ~ 995197 (+)
G361729 NA non-coding downstream 87859 995854 ~ 996076 (+)
CI01000154_01258168_01258920 RAB34 other downstream 349376 1257371 ~ 1258920 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009029 rhoub coding NC_007126.7 CM002899.2 8990577 ~ 9002155 (-)