CI01000158_00824227_00826846 (COX5B)


Basic Information

Item Value
gene id CI01000158_00824227_00826846
gene name COX5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 824227 ~ 827033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_00824227_00826846.mRNA
GCTTTTCTGTCCAATACTCGTCGCTATCCACTTCACACCAGAGTATGGAATACATATGGTGATGACGTCTAATGCACGCGACGTGATAGTTACAAAAGCGCATCTTCGACGTCATCAGCCTGATTCTGATAGTTTTGGGGAAGAGGAAGACATGGCCGCAAGGTTACTGCTGAGAACCGCCGTACGGGCCGCGACGACCTGCAGGCCGTCTCCAGTGGTCGCTCTGAGCAGAGGGATGGCGGCGGGAGGTATTCCCACTGATGAAGAGCAGGCAACTGGACTCGAGAAGAAGATTATGCATGCTCTGAAAACAGGCTCAGATCCTTACAGCATGCTGAAGCCCAAGGAGTATGCAGGATCAAAGTCGGACCCCCATCTTGTACCTTCCATCACCAACAAACGAATTGTTGGCTGTGTCTGTGAGGAGGACAACACCGCTGTGGTGTGGTTCTGGCTCCACGAGGGTGAACCCCAGCGCTGTCCCTCATGCGGCTCTCATTACAAGCTAGTGCCTCATGAGCTGCCTCACTGAGCCGCTGCCTCCAACGCAGAGTCGCATCCCAGAATTCCAGAGACGTGGTGACCTCATTCATGTTTGTCATTTTGCAAAGAAGTACAGGGGATGTAACCTGTCCTCCTGATTTGGGACACAATATTTTAGCAAACAATTTCCGTAAATTATTGGAGTGTACATTTTGCGTTTGGTCCAGTTACACCTA

Function

symbol description
cox5b Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Located in mitochondrion.

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02265 COX5B; cytochrome c oxidase subunit 5b

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_00824227_00826846.mRNA True 719 mRNA 0.51 4 824227 827033

Neighbor

gene id symbol gene type direction distance location
CI01000158_00816429_00823573 DBNL coding upstream 523 816029 ~ 823704 (+)
CI01000158_00777147_00777773 NA coding upstream 45608 776906 ~ 778619 (+)
CI01000158_00749321_00751813 NA coding upstream 72084 749066 ~ 752143 (+)
CI01000158_00743384_00745236 NA coding upstream 78796 743250 ~ 745431 (+)
CI01000158_00735610_00736996 NA coding upstream 86090 735524 ~ 738137 (+)
CI01000158_00852564_00863444 NPY8AR coding downstream 25069 852102 ~ 864241 (+)
CI01000158_00878419_00882435 ACTY, ACTR1, ACTR1A, ACTR1A.L, ACTR1B coding downstream 51075 878108 ~ 882435 (+)
CI01000158_00885015_00891759 KCTD9B, KCTD9 coding downstream 57982 885015 ~ 892239 (+)
CI01000158_00923138_00936354 FGFR1B coding downstream 96105 923138 ~ 937791 (+)
CI01000158_00955930_00956923 NA coding downstream 128057 955090 ~ 957765 (+)
G363273 NA non-coding upstream 99308 723175 ~ 724919 (+)
G363312 NA non-coding upstream 108897 715022 ~ 715330 (+)
CI01000158_00664367_00681491 SETD1BA non-coding upstream 140381 664289 ~ 683846 (+)
CI01000158_00661816_00663755 NA non-coding upstream 160665 661390 ~ 664167 (+)
G363308 NA non-coding upstream 192667 631250 ~ 631560 (+)
G363354 NA non-coding downstream 4224 831257 ~ 831603 (+)
G363410 NA non-coding downstream 69584 896617 ~ 896848 (+)
G363418 NA non-coding downstream 145146 972179 ~ 972601 (+)
G363381 NA non-coding downstream 167982 995015 ~ 996085 (+)
G363369 NA non-coding downstream 187770 1014803 ~ 1016796 (+)
CI01000158_01687966_01688623 CRYBA4 other downstream 860934 1687966 ~ 1688784 (+)

Expression


Co-expression Network