G364203


Basic Information

Item Value
gene id G364203
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1687966 ~ 1688828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU415405
ACCGTTTATTTATTTTTTTATTTTTTCAAAGTGTCCAAAATCCCTCACTGTTGCTTTGAGGTTTCAGTTAATTCACTCTTTTTTTCTTCTTCCTCTTCTTTTTTTGGACACAGATCTATAACAGGAGGTCAGTGAGGTTTAAGAAAGACAGTTTATTTAGCATCGGGCAGAAAGGGGCATGAGAGTTTTTGCAAGGAGAAATCCGTTACTGCTGGATACGGCGGATGGACTGGATCTGAGGGGTCTGGCAATGGGAACCAAACTCCTTGAAGTGTTTGTACTCCCCACAGTGGCGGTCACACTCCATGATATACTGGTATCCACGATAACCAGGGAACTGGTAGCACACAAACGCTCCGGACTGAACACGGAAAGAACCCACTTCGTTGTTGCACCATCCCATAGCCTGAAGAGAAGGGTAATCGTCACTGAGCTCTCCCTTGCGGCCCAGGAAGTTCTCCCTTTCATAGATGGTCATTCTGCACTCCCTGTGGTTAGCACAGGAAATGGGTCTAAAGGAGGTCATTCTCTCGATGTGGTAAGCATTGCTTCCCCCAAAGGCATCGCACTGAGGGTACTCTCCGCGCTCCAGCACAAACTGGTGACCCTGGTAAGAGGCGTGCTCGTAGCCCACCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU415405 True 638 TUCP 0.48 3 1687966 1688828

Neighbor

gene id symbol gene type direction distance location
CI01000158_01674288_01681153 NA coding downstream 6813 1673678 ~ 1681153 (-)
CI01000158_01641190_01654617 SEPT5, SEPT5B, SEPT5.S coding downstream 33349 1641084 ~ 1654617 (-)
CI01000158_01602975_01638158 MCTP1B coding downstream 49808 1602922 ~ 1638158 (-)
CI01000158_01595127_01599555 NA coding downstream 87656 1594960 ~ 1600310 (-)
CI01000158_01561252_01564385 ARRDC3B coding downstream 123403 1561252 ~ 1564563 (-)
CI01000158_01689842_01690063 NA coding upstream 715 1689543 ~ 1690063 (-)
CI01000158_01808271_01810226 NA coding upstream 119132 1807960 ~ 1810531 (-)
CI01000158_01921098_01929676 TACR1B coding upstream 231764 1920592 ~ 1929676 (-)
G364109 NA non-coding downstream 16858 1669390 ~ 1671108 (-)
G364200 NA non-coding downstream 21826 1665930 ~ 1666140 (-)
G364103 NA non-coding downstream 234157 1452257 ~ 1501547 (-)
G364112 NA non-coding downstream 240161 1426023 ~ 1447805 (-)
G364116 NA non-coding downstream 250486 1358156 ~ 1437480 (-)
G364229 NA non-coding upstream 90382 1779210 ~ 1789155 (-)
G364268 NA non-coding upstream 165783 1854611 ~ 1869953 (-)
G364286 NA non-coding upstream 210120 1898948 ~ 1899444 (-)
G364270 NA non-coding upstream 213767 1902595 ~ 1907980 (-)
G364272 NA non-coding upstream 220134 1908962 ~ 1909163 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other downstream 965454 717291 ~ 722084 (-)
CI01000158_00286848_00307666 NA other downstream 1372577 286545 ~ 307666 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location