CI01000161_01387036_01388147 (LSM5)


Basic Information

Item Value
gene id CI01000161_01387036_01388147
gene name LSM5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000161
NCBI id null
chromosome length 3087367
location 1387012 ~ 1388622 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000161_01387036_01388147.mRNA
ATGGCGGCAGTAGCGGCAACAAATCCTTCGCAACTTTTACCTCTCGAGCTGGTGGATAAATGCATTGGCTCTCGGATTCACATCGTTATGAAGAACGATAAAGAGATTGTGGGAACTCTGCTCGGGTTCGACGACTTTGTCAGTATCCTTTAACTGCTGGAAAAAACGCTGACACAGATTTGTGATGGTTAATGTTTTAGGATTAGATTTAACTTAATTTTGCAAAATACAAGTAGCCAGTAATACAGGTACACATTCATTTATTTGTCCTGTAAATGTAAGAGACTTACATTTGTTTTAATGCCATTGTAGTTACTGTTTTAATGAAGTGAAATTAATCGCAAATTACTGCTGCAGAAATTTTGCTGACATGATGTAAAGAAAGAGAGGGTGTAGTGAATTCAAAAAGTGTGGCAGTGGCAGGAATGTACTAAAGATTCTCAGTTCATAATGTAATGCATTCTTTGTGATGTTTTACATTCTTGATTCTTTTAATCAGACATGGTCCTTGAGGATGTGACAGAGTTGTAAGTAGATGTAATATGTGCTTATATATTTCTTTATTTTCTTTGCCCCATTTATGCATCCAACTTCTTAGACTTAAACTTCTCGACAAACATACAACTAA

Function

symbol description
lsm5 Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Lsm1-7-Pat1 complex; U4/U6 x U5 tri-snRNP complex; and U6 snRNP. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated).

GO:

id name namespace
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000161_01387036_01388147.mRNA False 628 mRNA 0.36 2 1387036 1388622

Neighbor

gene id symbol gene type direction distance location
CI01000161_01272798_01288327 NA coding upstream 98138 1272798 ~ 1289008 (+)
CI01000161_01260410_01265135 NA coding upstream 121615 1260410 ~ 1265421 (+)
CI01000161_01236311_01253636 STAT5B, STAT5A, STA5B, STAT5 coding upstream 133090 1236311 ~ 1253946 (+)
CI01000161_01187108_01189802 FOXH1 coding upstream 197171 1185454 ~ 1189865 (+)
CI01000161_01084125_01132855 NA coding upstream 254029 1084125 ~ 1133007 (+)
CI01000161_01403705_01410179 EMC9 coding downstream 15083 1403705 ~ 1410370 (+)
CI01000161_01484780_01492989 PELO coding downstream 96158 1484780 ~ 1493080 (+)
CI01000161_01582069_01635520 NA coding downstream 193447 1582069 ~ 1635536 (+)
CI01000161_01695831_01704007 NA coding downstream 306748 1695370 ~ 1704449 (+)
CI01000161_01713184_01716404 SLC35D1B coding downstream 324562 1713184 ~ 1716404 (+)
G366563 NA non-coding upstream 1868 1384398 ~ 1385168 (+)
G366562 NA non-coding upstream 2679 1383983 ~ 1384357 (+)
G366526 NA non-coding upstream 3473 1380848 ~ 1383563 (+)
G366561 NA non-coding upstream 8638 1378113 ~ 1378398 (+)
G366560 NA non-coding upstream 9345 1377456 ~ 1377691 (+)
G366520 NA non-coding downstream 16761 1405383 ~ 1505678 (+)
G367123 NA non-coding downstream 148098 1536720 ~ 1537132 (+)
G367125 NA non-coding downstream 150168 1538790 ~ 1553519 (+)
G367138 NA non-coding downstream 172874 1561496 ~ 1561913 (+)
G367131 NA non-coding downstream 257151 1645773 ~ 1646098 (+)
G366441 NA other upstream 388814 997902 ~ 998222 (+)

Expression


Co-expression Network