XLOC_011813 (KLHL28)


Basic Information

Item Value
gene id XLOC_011813
gene name KLHL28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 599084 ~ 608857 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023382
atgaacccTGCCCTGTGTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGCATACACAGGCACCGTCTTCATCTCACAGGAAACGGTGGAGTCTCTACTTCCTGCCGCCAACCTGCTGCAGGTGAAGCTGGTGCTGAAGGAGTGCTGCAGTTTCCTGGAGAGTCAGCTGGACGCCGGAAACTGTATCGGCATCTCCCGCTTCGCCGAGACCTACGGCTGCCACGACCTGTGCCTCGCCGCCAGCAAGTTCATCTGCCAGCACTTCGAGGAGGTGTGCCAGACGGAGGAGTTCTTCGAGCTGACGCGCGCCGAGCTGGACGACATCGTGTCGAACGACTGCCTGAACGTGCTGACGGAGGAGAGCGTCTTCTACGCGCTGGAGTCCTGGATAAAGTACGACGTGTCGGAGCGGCAGCAGCACCTGGCTCAGCTCCTGCACTGCGTCCGGCTGCCGTTGCTGAGCGTCAAGTTCCTGACGCGACTCTACGAGGCCAATCACCTGATCCGGGACGACCACGCCTGCAAACACCTGCTCAACGAGGCGCTCAAGTACCACTTCATGCCTGAACACCGGCTCTCCTACCAGACCGTCCTGTCCACACGGCCCCGCTGCGCTCCCAAAGTACTGCTCGCTGTGGGGGGGAAAGCAGGACTGTTCGCCACACTGGagagtatgGAGATGTACTTCCCGCAGACGGACTCGTGGTTGGGTCTGGCTCCTCTGCCTGTACCGCGGTATGAGTTTGGGGTGGCAGTGCTGGAGCAGCAGGTGTATGTGCTGGGGGGTATTGCCACACACATGCGGCAGGGAATCAGCTACCGGCGACACGAGAGCAGTGTGGAGCGCTGGCACCCCGACACCAACACCTGGAGCTCGGAGCGCCGCATGGCCGAGTCGCGCAGCACACTGGGGGTGGTGGTGCTGGCCGGAGAACTGTACGCGCTGGGTGGATACGACGGACAGTATTACCTGCAGTCTGTGGAGAAATACCTGCCCAAGCTGAAGGAGTGGCAGCCTGTCGCCCCCATGACCAAATCACGCAGCTGCTTCGCCACCGCCGTGCTGGACGGCATGATCTACGCCATCGGCGGATACGGACCCGCACACATGAACAGtgtggagaGGTACGACCCCAGCAAAGACTCCTGGGATATGGTGGCACCGATGGCGGATAAACGCATCAACTTTGGCGTGGGTGTGATGCTGGGCTTCATCTTCGTGGTGGGAGGACACAACGGCGTCTCGCATTTATCCAGCATCGAGAGATATGACCCCTACCAGAACCAGTGGACGGCCTGCAGACCCATGAACGAGCCACgcacaggcgtgGGCTCAGCGGTGGTGGATAATCTGCTGTATGTGGTGGGGGGTCACTCGGGCTCCTCGTACCTGAACGCAGTGCAGCGTTACGACCCGCTGACGGACGGCTGGATCGACGCCTCCGGCATGATGTACTGCCGCTGTAACTTTGGCCTCACGGCTCTTTGACCCTGGGCCCCGCGGACCCCGCGCTGACTCTctgacgagtgtgtgtgtgtgtgtgcgcgctccgCCTGGACGCGGATGCGGACGCAGAGCCATCACTGAACACACTCTGAACTGCGGCACACAGAGCTCTGCTGCTCCCCTTTACACACACCGCACAGACCAGGACacacacaggtgtgtgtgtgtgtgtgagacgcaTGTGTTCTGCAGGAGGAGCCACGACTCGGCACAAGGGCTGCCTTCTGTCCTCtccatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgcatacATGGATGCATGtctgtgtatgagtatgtgtgtgtgtctgtgtgtgtgcgcgtgcgtgcatgtatgtatatgtgtgagtgcgtatgtgtgtgcgcatatgagtatatttatgtgtgtatgaaCGTGTGTGTGTTCTAGTGCAGTTCtaggacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgcataCACTTGtatgagattgtgtgtgtgcacgcatgaatatgtatgtatatatgtgtgtgtgtgtgtgtgtgcgtgcatatgcTTGTGCGAGATGTGTGTATGTTAGTATATCAGCTGTGTATGAGTCAacgcttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatatgcTTGTGCGAGATGTGTGTATGTTAGTATATCAGCTGTGTATGAGTCAacgcttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatatgcGTGTGCGAGATGTGTGTATGTTAATATATCATCTGTGTATGAGTCAacgcttgagtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgc

Function

symbol description
klhl28 Orthologous to human KLHL28 (kelch like family member 28).

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDARG00000101676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023382 True 2555 mRNA 0.54 5 599084 608857

Neighbor

gene id symbol gene type direction distance location
XLOC_011812 chrm5a coding downstream 133799 463746 ~ 465285 (-)
XLOC_011811 NA coding downstream 176114 422064 ~ 422970 (-)
XLOC_011810 NA coding downstream 216643 378483 ~ 382441 (-)
XLOC_011809 LO018437.2 coding downstream 322038 262803 ~ 277046 (-)
XLOC_011808 CABZ01083778.2 coding downstream 393774 205194 ~ 205310 (-)
XLOC_011814 soul3 coding upstream 51269 660126 ~ 681142 (-)
XLOC_011815 SLC25A29 coding upstream 97773 706630 ~ 722218 (-)
XLOC_011816 wars1 coding upstream 125276 734133 ~ 735537 (-)
XLOC_011817 CABZ01102109.1 coding upstream 132567 741424 ~ 751083 (-)
XLOC_011818 NA coding upstream 147912 756769 ~ 792139 (-)
XLOC_011819 NA non-coding upstream 170403 779260 ~ 780017 (-)
XLOC_011820 CABZ01085626.1 non-coding upstream 202325 811182 ~ 814743 (-)
XLOC_011827 NA non-coding upstream 1248836 1857693 ~ 1874223 (-)
XLOC_011828 NA non-coding upstream 1266803 1875660 ~ 1880545 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000060_00250630_00253821 KLHL28 coding CI01000060 null 250558 ~ 253821 (+)
bowfin (Amia calva) AMCG00000394 klhl28,LOC106581578,LOC106610877 coding CM030141.1 CM030141.1 13731513 ~ 13739622 (+)