G372247


Basic Information

Item Value
gene id G372247
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000171
NCBI id null
chromosome length 912836
location 693696 ~ 694083 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU425154
CTCGATTTTGTCCACGTTCCGAGCGCATCCGACCACCTTCATGCCATGCTGGACGAGAGCGCGAGCCACAGCCGCTCCGATGCCGACAGACGCTCCGGTGACCAGCGCGACTCTCCCCTTCCAGCGCTCCATCATCAGAGGCAGCAGATACAGTGTATCACAATCACAATGTCACAATGTAACAAAGAGTTCTAATCCGCGCCGGAATGGAACAATGTATCAGATCAGACTGCGCGCGGCTGTTACTTTGTTTCTGTCTGTGTCGCGCACGCAGCGGCCGTGCAGTAATATCTCTGATTCAGAATAGTATCAGTCAGTGTGTTTAGGGCGGGAACAAATCACTCCAGCCCTCCCTGATCTTCTGTCGTTAACACCCAGGAACAGCTCA
>TU425153
CTCGATTTTGTCCACGTTCCGAGCGCATCCGACCACCTTCATGCCATGCTGGACGAGAGCGCGAGCCACAGCCGCTCCGATGCCGACAGACGCTCCGGTGACCAGCGCGACTCTCCCCTTCCAGCGCTCCATCATCAGAGGCAGCAGATACAGTGTATCACAATCACAATGTCACAATGTAACAAAGAGTTCTAATCCGCGCCGGAATGGAACAATGTATCAGATCAGACTGCGCGCGGCTGTTACTTTGTTTCTGTCTGTGTCGCGCACGCAGCGGCCGTGCAGTAATATCTCTGATTCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU425154 False 388 lncRNA 0.54 1 693696 694083
TU425153 True 303 lncRNA 0.55 1 693781 694083

Neighbor

gene id symbol gene type direction distance location
CI01000171_00663431_00666879 NA coding downstream 26817 663431 ~ 666879 (-)
CI01000171_00659729_00660264 MYO19 coding downstream 33432 659729 ~ 660264 (-)
CI01000171_00650378_00659595 NA coding downstream 34101 650311 ~ 659595 (-)
CI01000171_00608319_00641115 NA coding downstream 51943 607794 ~ 641753 (-)
CI01000171_00530302_00562539 NA coding downstream 130451 528920 ~ 563245 (-)
CI01000171_00732682_00786057 NA coding upstream 38444 732527 ~ 786075 (-)
CI01000171_00788022_00797188 SRRT coding upstream 93663 787746 ~ 797188 (-)
CI01000171_00824754_00842657 APOO, APOOA coding upstream 130564 824647 ~ 842918 (-)
CI01000171_00871295_00874260 NA coding upstream 176970 871053 ~ 874312 (-)
CI01000171_00881122_00881454 NA coding upstream 186730 880746 ~ 881454 (-)
G372219 NA non-coding downstream 49945 643105 ~ 643751 (-)
G372136 NA non-coding downstream 113617 572585 ~ 580079 (-)
G372142 NA non-coding downstream 124614 568633 ~ 569082 (-)
G372135 NA non-coding downstream 176673 516732 ~ 517023 (-)
G372212 NA non-coding downstream 178698 514790 ~ 514998 (-)
G372251 NA non-coding upstream 3730 697813 ~ 698029 (-)
G372237 NA non-coding upstream 13261 707344 ~ 708663 (-)
G372257 NA non-coding upstream 18708 712791 ~ 713106 (-)
G372259 NA non-coding upstream 25704 719787 ~ 720078 (-)
G372104 NA other downstream 48322 586777 ~ 645374 (-)
G372133 NA other downstream 222388 453246 ~ 471308 (-)
G372125 NA other downstream 263814 383328 ~ 429882 (-)
CI01000171_00167413_00206328 NA other downstream 396854 167084 ~ 206507 (-)

Expression


Co-expression Network