CI01000185_00015550_00020227 (IRF6)


Basic Information

Item Value
gene id CI01000185_00015550_00020227
gene name IRF6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000185
NCBI id null
chromosome length 228139
location 15126 ~ 20227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000185_00015550_00020227.mRNA
AAGCTCATCATGTCGTCTCATCCGCGTCGTGTCCGGCTCAAGCCCTGGCTGGTGTCTCAGGTGGACAACGGGACGTTTCCCGGTCTGGTCTGGCTGGACCGCGAGGCCAAACGCTTCCAGATCCCATGGAAACACGCCACGCGTCACACGCCCCAGCAGGAAGAGGAAAACACCATCTTTAAGGCCTGGGCCGTGGAGACCGGGAAGTATCAGGAAGGAGTGGACGAGCCGGATCCGGCCAAATGGAAAGCTCAGCTGAGATGTGCTCTGAACAAGAGCCGCGAGTTCAACCTCATCTATGACGGGACCAAAGAGGTTCCCATGAACCCGCTGAAGATCTACGACGTGTGTGATATTCCTCAAACGCTCAGTAACCCAGGTTCAGTGACCACGTATGAGACTGACGGCGATGAAGACGATGTTCCCGACACTCCTGAACCTCCTCCGCCATATCCACCTCACGGGATGAGCTCCTCGCCGCTGGCTCCGGTTTGGACTCCTCCGGGCTCCGTGTCTCCGATGCAGCCGGCCAGCTGCCCTCCTCCCCCTCCCCCCGCGGAGGTGTGGCCTAAGAAAGAGCCGCTGGACGTGGAGATGCAGCCGCCGCCCATGGAGCTCCAGACGCCCACAGCCTTCGACGGCATGTTCGCCACCCCAGAGACCTGGATCAGCTCTCTGCCCATGACAGATCTGGAGGTTCAGTTTTATTACCGCGGTAAGGAGGTGTGTCCGCCGGTAATCGTGAGCAACCCGCAGGGCTGCCGGCTGTTCTACGGCGATCTGGGGCCGATTGTCAATCAGGAGGAGCTGTTCGGGCCAATCAGTCTGGAGCAGGTGCGCTTCCCCTCCACCGAACACATCACCAACGACAAGCAGCGTGTCTTCACCAGCCGCCTGCTGGACGTGATGGACCGCGGCCTCATTCTGGAGGTGAGCGGACACGACATCTACGCCGTGCGGCTGTGCCAGTGTAAAGTGTACTGGTCCGGCCCCTGTGCGCCCAACCCCAACACGCCCAACCTCATCGAGCGCCAGCACAAGGTCAAGCTCTTCTGCCTGGAGTCCTTCCTCAGCGGGGTCATCACTCACCAGAGGGGTCAGTCCTCTTCTGAGCCCCCTCTCTATGACATTCACCTGTGTTTCGGGGAGGAGTGGCCCGACGGCAGACCCAGAGAGAGGAAACTTATCATGGTGCAGGTGGTCCCGGTGGTGGCGCGCATGATCAGCGAGATGTTTTCGGGCGACTGCACGCGCTCGTTCGACAGCGGAAGCGTGCGCCTGCAGATCTCCATCCCAGACATCAAAGACAACATCGTCACACACCTCAAGCAGCTCTACCGGCTGCTGCAGACACATCAGGGGCAGGAGAACTGGCCCCTGCCGCCTGGGGCCGCCCTCCACCTCCCGCAGGCCCTGCAGACGCAGTGACCCGCTCCCACCCGTCCGTGTTTTTAATGAGAAGTACTTAAGACGCTTTAGAGACTCTGAAACTGTAGTGTTTCAGTGCTCTTCTTTTAGTGTGTAAATGTCGCTGGGTCAAAGTCTAGCGTGTTAATGATCAGCCACACTGAACGTCCGCCCAGATATTTAGACAGATGTACGTAGATGTTCTTTTATCAGAGGGAACTAACATTTGCTTATCGCTTCAGTTTCACATATATAATGAGCTTTTAACCATGTTATTGTGTTTTTATTGCTGACGTATGTTACGCTTATAATCAAAATGTCAGGTTTATGTGGTTTTTCGCACTTGTGGGGTTGAATATCATCTAGTTTTTTTTAACCATATTATGTATTTGACATCCCATCATGTAGATTTGTGTAATAATGTTACTTGGATTTATCAAATAAA

Function

symbol description
irf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in epidermis development. Acts upstream of or within embryonic neurocranium morphogenesis and epithelium development. Predicted to be active in nucleus. Is expressed in several structures, including blastoderm; digestive system; forerunner cell group; head; and sensory system. Human ortholog(s) of this gene implicated in several diseases, including Van der Woude syndrome; cleft lip; orofacial cleft 6; popliteal pterygium syndrome; and syndactyly. Orthologous to human IRF6 (interferon regulatory factor 6).

NR:

description
interferon regulatory factor 6

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000185_00015550_00020227.mRNA True 1852 mRNA 0.55 7 15126 20227

Neighbor

gene id symbol gene type direction distance location
CI01000185_00004801_00013583 NA coding downstream 1543 4574 ~ 13583 (-)
CI01000185_00107906_00156757 NA coding upstream 87429 107656 ~ 157424 (-)
CI01000185_00193329_00212613 NA coding upstream 171466 191693 ~ 215393 (-)
G378069 NA non-coding upstream 5736 25963 ~ 60834 (-)
G378074 NA non-coding upstream 15658 35885 ~ 52802 (-)
G378081 NA non-coding upstream 39650 59877 ~ 95290 (-)
G378086 NA non-coding upstream 70384 90611 ~ 94556 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019936 irf6 coding NC_007133.7 CM002906.2 1170294 ~ 1182165 (+)
bowfin (Amia calva) AMCG00013857 LOC107698281 coding CM030125.1 CM030125.1 45639830 ~ 45647135 (-)