XLOC_011977 (ppp1r13ba)


Basic Information

Item Value
gene id XLOC_011977
gene name ppp1r13ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 14614145 ~ 14691576 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023649
ctcacacacactcggTCAGACAGACAGTCAGGCTCCCAAAGGAGAGAGAGAAGGACACACTCCAATGGGCTCCAGTGAGCCTGGGCGGGTCGGCTCCTCCAGTCCATCAACCCCCAAATCCAGAGCTCCATGAGGAGGTTCTTTAACATGGTGCTCCGCAGCCTGGTCAGCACCTCCAAAGGCAGGCCGTGGCTGCAGAAGAGAGTGCGGGCGCAGGGGAAGGACGACCAAAAGGCGACTAAGACGATTCTGACCGTATTCCTGAGTGATAATCAACAGTTGCTGACCGAGGTGCCCATTACTCCAGAGACGCTCTGTAAGGATGTGGTGGAGTTCTGTAAGGAGGCCGGAGAGAGCGGCTGCCACCTCGCTGAAGTCTGGAAAGGAAAAGAAAGAGCCATCCCGTTTGATCAGATGATGTTCGAGCATCTGCAGAAATGGGGTCAGAGGAGAGCGGAAGTCAAGTTTTACCTGCGGCATGAAGAGTGTCCCATCACAAATGCTTCTCAAGGAAGTCAGACTGCAGATCAAGCTGACAGGAAGTGCAGAGGGAATTCGGACAAGCCCTCCGAAAATGGGgtgGGGAATCCACGTGTGGAGCTAACACTGTCAGAGCTGCAGGAGATGGCAATGCGACAGCAGCAGCAGATCGAAACTCAGCAGCAGATGCTTATAGCGAAGGAGCAACGATTGCGGTATCTCAAGCAGCAGGACCCATGTCAGGGCCAGTCTGCGTCTGAGAGTGACAAGCTCCAGAGGTTGAGGGAAAGAGTGGAGAATCAAGAAGCCAAACTCAAAAAGGTCCGTGCCATGAGGGGTCAAGTGGACTACAGCAAACTCATCAATGGCAACCTGTCTGCAGAAATCGAGCATGTGAGCAGCCTGTTCCAGGAGAAGCAGGCAGAGCTGCAGTCGGCCATGCTGAAGGTGGACCAGCTCACGCAGCAGCTAGACGATCTGCGGCAGGGACGTCTCAATGGACTGCAGCCTCTAGGGGGACCAGTGACCAGTAATGCTGCACTGGAGCTCCGCAAACTCTACCAGGAACTGCAGATCCGGAACAAGCTAAATCAGGAACAGAACAGCAAGCTACAGCAACACAAGGATATGCTTAACAAACGTAATATGGAGGTGACCATGATGGACAAGCGAATAGGGGACCTTAGAGAGCGTCTCTACAAGAAAAAAGCAGAGCTCGGCCGAATGAATGGTCCTCCCTCCCCTCAGCCTACCCCTGGCAGTTCAGGGCGGGTGGCAGCGGTCTGTCCCTACATCCAGGTCCCAGTGCCTGGAAGAAAGGAAGGTTACACTTTACCTCCAGAGCCCTTGAAGCCACACTCTTTTTCCACAGTCAACCATGCTCGTTCCAAATCAGAGGAAGACAGGGTGAGGATGCCTGCAGGCCCATGGAAGGTCTCAGACTTAGACATCATAGTGGACCCTCTGGTGCCATCCTCAGAGCCTAGCAATGGGCCAGACTCCGACTGTTTTTCTACAAATGATGCAATCTGGCCCTCCTTCAGCAGTAATAGGGTTCCTCTAAAACCTCCAGATTGGAAAGACGCAAACCTAGATCATACCAGCAAGATGGGTACCTCAGACAAGGAAGCCCCTAAGCTCTTAGGGACAGTAACAGCATTGTCTAAGCAGCCTCCACCCATCTATGGAACCTATCCCAGTGCAGGCCATCACTCCACAGTCTGTGCTACCAGCTCTTTGCCCCGCTCTGCTCCTGGCACCCTAGGTTGGCAGAGAGCACCCCCCACCTCTGGTTCCACTTCACAACAAATCCAACAGCGGATTACTGTGCCTCCCAGTCCTACGCCTGGGTCAGCTCTTTTTCCTCACGGTGAGAGAACAGAACCTCCTCTTGCTGTTGCGGTGCGTCCCTTTATTCCAGACAGAGGTTCCAGGCCCCAATCTCCAAGGAAGGGCCCTGCCACGATGAACTCCAGCTCAATCTACAATATGTACCTGCAGCAGCCTACAGCCAAAAACTACTCCGGTAGCAGCAGAACTGCTGTTAAAGCAGTATATGGAAAACCAGTCCTACCAGGCTCCACCTCTCCGTCTCCAGTTCCACTCTACCAGCAGTCATCCACAGATGAGACAGACAGAGAGGCAGCCCAAGAGAACCATCCCTTACCTCCTTCTAGTGTGGAAAACATCCCTCGCCCTCTCAGCCCTACCAAGCTGACCCCTGTTGCCCACTCCCCTCTCCGTTACCAAAGTGACATTGATTTGGAGGTGCTAAGAAGGAAGTTATCCAATGCTCCCCGACCACTGAAGAAGAGAAGCTCCATCACAGAACCAGAAGGCCCCAGTGGGCCTAACATCCAGAAGCTCCTGTACCAACGATTCAACACCCTTGCAGGGGGTATTGAGAGTGGAGTAGGTGGTACACCCTTCTACCAGCCTGACAGTCCTCTGAACTACATGGCCACTGCTTTGGGCAATGTAGACACAGCTAATGGGAACCTGATGGAGTCAAGCATGTTAGTTGAGCCTTCAGCAGAGCTGGTAATGGTTCCTCCTCCCACCGCTTCTGTGTCTCCTACAGCTGATGACAATGAGAACAAGTTGACACATCTTTCTAGTGACTCAGGGGGTGCCCAGTCTGCTGATGCCTTAGAACATTCTCTTAAAGACACCCATGAGGACAATCATAACAACAACCACACAAATGTCACGGACACACAACCTAGTTCAGTACCAGAACCCCACTCCCCTGCAGAGGAAGACATCACAGCACAGTCGGGAATGTCTCCTGGTTTATCTACCGTCAAGCGTACCAACTTGAAGAAGCCTGGTTCTGAGAGGACAGGTCATGGCTTGAGGGTCAAATTCAATCCTCTTGCACTACTTTTGGATGCATCTTTGGAGGGCGAGTTTGATTTGGTGCAAAGGATTATCTATGAGGTGGAAAATCCTAGCACACCAAATGATGAAGGTATCACCCCTCTCCATAATTCGGTATGTGCAGGTCATCACCATATTGTAAAATTCCTGCTGGATTTTGGGGTCAACGTTAATGCAGCTGATAGCGATGGATGGACACCCCTTCATTGTGCAGCTTCATGCAACAATGTTCATCTTTGTAAATTGCTGGTGGAATCTGGAGCTGCCATTTTTGCCACTACTATCAGTGACGTGGAGACGGCAGCAGACAAGTGTGAAGAGATGGAGGAAGGTTATGTCCAGTGCTCTCAGTTTCTTTACGGTGTGCAGGAGAAACTGGGggtaatgaataaagggactgttTATGCCCTGTGGGACTATGAAGCTCAAAGTGCAGATGAGCTGTCTTTTCGTGAAGGTGATGCTCTCACTATAATGAGTCGTAGGGACGACAGCGAGACAGAATGGTGGTGGGCCAAAGTAAATGACAAAGAGGGCTATGTACCACGCAACTTGTTAGGGCTGTACCCAAGAATCAAACCCAGGCAACGTTCTTTGGCATAGATGGCCTGAAGAGACAGTATTATACACAGCACTTGGCATGAAACTGTGGGATGCTGCCCTGCCCTGTCTTTGCCGTCACCACAACACAGAGCCCACAGGGGTGGCAAGATGATGGAGCACGTCTGGTGTCGGACAAGATGGATTTACCCATGAGCGGGGAATTCAGTGGTCTTCTGTTTGCATCCCAGATTTATTCGTCACTATGATGTGTTGTTTTTGCAGTGTCCCTCTCACCCATATCTCTGTTGAGGAACATGTTAGCTATTCTGTCCTCTTCCACAGCACAGACCTCCTGAGTATGTGTGCGTTTGTGAGTGTTTCAGAGTGGGATGTGTTCTGTAAGAGTGGGAAGTGCATGTGACATGATGATAAGAGTTGGTGACAGAGTATGCGGTCTTGGATTCCAATGTTTCGTGCTCTGTGGGTATTATCAGGCAAAGAGGAAACCAATGGAACTGAAGTTTCATTTCCCACGGTTAGGAAGTCGCTGATTCAGGGAAAAGGAAGGAAGGTGCTGGAAAGTGTTTACAAAGAGGCCTTGAGGCTGGTCAAGCTACTGATGGATGATAAGGAAGTGGCCTGTTATGgaaacatgtatgtatgtatgtttgtgtgtgttgaggatTATATGGGCTTGAGGAGGTGAAATTGTGTAGTCATTTGTGACTTGGGTGCTGGAAGAAAACTGATGACATGACTAATACAGTGGCTGTTCTTCAACAGGGGATACTGTCAACATATCACACAAAACCTATAGCATATTCCTATGCTTAATTTAAGTCAGGCTTGATATTTTTTTATGCTACATGATTCCCTTTTAAGGGTTCTTTATTTAATGGAAGTAAAAAGAAATTCTTTAAACAGCTTGATATAAGCTTTTATGGCTGCCAAAAGAGCCAGGATCTGCCGAGTGTTTGTGCTGCCATACAAGAGCAGTTTATGTAATGTCATGTATATGTGCACAATAAAATTTCCACATTGGGACAA
>TCONS_00023650
CCAATGAGCAGGTCAGTCTGTCATAATGAGGCTGACTGAAGAAAGAACATATACGTCTCAGTCTCTTCCTTTGTAACTAATACTGCTGTGCTCCCAACAGCAAATGATGCAATCTGGCCCTCCTTCAGCAGTAATAGGGTTCCTCTAAAACCTCCAGATTGGAAAGACGCAAACCTAGATCATACCAGCAAGATGGGTACCTCAGACAAGGAAGCCCCTAAGCTCTTAGGGACAGTAACAGCATTGTCTAAGCAGCCTCCACCCATCTATGGAACCTATCCCAGTGCAGGCCATCACTCCACAGTCTGTGCTACCAGCTCTTTGCCCCGCTCTGCTCCTGGCACCCTAGGTTGGCAGAGAGCACCCCCCACCTCTGGTTCCACTTCACAACAAATCCAACAGCGGATTACTGTGCCTCCCAGTCCTACGCCTGGGTCAGCTCTTTTTCCTCACGGTGAGAGAACAGAACCTCCTCTTGCTGTTGCGGTGCGTCCCTTTATTCCAGACAGAGGTTCCAGGCCCCAATCTCCAAGGAAGGGCCCTGCCACGATGAACTCCAGCTCAATCTACAATATGTACCTGCAGCAGCCTACAGCCAAAAACTACTCCGGTAGCAGCAGAACTGCTGTTAAAGCAGTATATGGAAAACCAGTCCTACCAGGCTCCACCTCTCCGTCTCCAGTTCCACTCTACCAGCAGTCATCCACAGATGAGACAGACAGAGAGGCAGCCCAAGAGAACCATCCCTTACCTCCTTCTAGTGTGGAAAACATCCCTCGCCCTCTCAGCCCTACCAAGCTGACCCCTGTTGCCCACTCCCCTCTCCGTTACCAAAGTGACATTGATTTGGAGGTGCTAAGAAGGAAGTTATCCAATGCTCCCCGACCACTGAAGAAGAGAAGCTC
>TCONS_00023651
CCACAGTCAACCATGCTCGTTCCAAATCAGCAAATGATGCAATCTGGCCCTCCTTCAGCAGTAATAGGGTTCCTCTAAAACCTCCAGATTGGAAAGACGCAAACCTAGATCATACCAGCAAGATGGGTACCTCAGACAAGGAAGCCCCTAAGCTCTTAGGGACAGTAACAGCATTGTCTAAGCAGCCTCCACCCATCTATGGAACCTATCCCAGTGCAGGCCATCACTCCACAGTCTGTGCTACCAGCTCTTTGCCCCGCTCTGCTCCTGGCACCCTAGGTTGGCAGAGAGCACCCCCCACCTCTGGTTCCACTTCACAACAAATCCAACAGCGGATTACTGTGCCTCCCAGTCCTACGCCTGGGTCAGCTCTTTTTCCTCACGGTGAGAGAACAGAACCTCCTCTTGCTGTTGCGGTGCGTCCCTTTATTCCAGACAGAGGTTCCAGGCCCCAATCTCCAAGGAAGGGCCCTGCCACGATGAACTCCAGCTCAATCTACAATATGTACCTGCAGCAGCCTACAGCCAAAAACTACTCCGGTAGCAGCAGAACTGCTGTTAAAGCAGTATATGGAAAACCAGTCCTACCAGGCTCCACCTCTCCGTCTCCAGTTCCACTCTACCAGCAGTCATCCACAGATGAGACAGACAGAGAGGCAGCCCAAGAGAACCATCCCTTACCTCCTTCTAGTGTGGAAAACATCCCTCGCCCTCTCAGCCCTACCAAGCTGACCCCTGTTGCCCACTCCCCTCTCCGTTACCAAAGTGACATTGATTTGGAGGTGCTAAGAAGGAAGTTATCCAATGCTCCCCGACCACTGAAGAAGAGAAGCTC
>TCONS_00023652
acacacactcggTCAGACAGACAGTCAGGCTCCCAAAGGAGAGAGAGAAGGACACACTCCAATGGGCTCCAGTGAGCCTGGGCGGGTCGGCTCCTCCAGTCCATCAACCCCCAAATCCAGAGCTCCATGAGGAGGTTCTTTAACATGGTGCTCCGCAGCCTGGTCAGCACCTCCAAAGGCAGGCCGTGGCTGCAGAAGAGAGTGCGGGCGCAGGGGAAGGACGACCAAAAGGCGACTAAGACGATTCTGACCGTATTCCTGAGTGATAATCAACAGTTGCTGACCGAGGTGCCCATTACTCCAGAGACGCTCTGTAAGGATGTGGTGGAGTTCTGTAAGGAGGCCGGAGAGAGCGGCTGCCACCTCGCTGAAGTCTGGAAAGGAAAAGAAAGAGCCATCCCGTTTGATCAGATGATGTTCGAGCATCTGCAGAAATGGGGTCAGAGGAGAGCGGAAGTCAAGTTTTACCTGCGGCATGAAGAGTGTCCCATCACAAATGCTTCTCAAGGAAGTCAGACTGCAGATCAAGCTGACAGGAAGTGCAGAGGGAATTCGGACAAGCCCTCCGAAAATGGGATGCTCCTGTAACATTCTGTGATGATGCTTACAGAGTTACCATTTCGGTCGCACTGTGCCTCCTGCATCCAGCAGATAAAACTTTATTAGATAATCAAAATTCACCGTAAAATGCGATTAGGAGTTCTGCGAGAATGCAAATGCTCCATCCGCAGAGATGAATGCTTAGCCCTTGAAAGTTGCAGAAGATCTGCGCTTGTTTTCCCTCAAGGCACTGTGCATAGTCATAAAAGAGAAACCTTTCTGTTTAAATGCTGCAAAAAATATCTGTgaattaatgtaatattttgttt
>TCONS_00023653
CGCTGACTGAGAGCTTGAATAAcactattaataaattaatttatagtcCATTCTTCTTTTGGAAGTTTAACATAGACGTTCATGTTTATATATTGGTCGTTCTGTTTGATTTCGCCGTCTTGCAATCATGATGCCGACGATTCTGACCGTATTCCTGAGTGATAATCAACAGTTGCTGACCGAGGTGCCCATTACTCCAGAGACGCTCTGTAAGGATGTGGTGGAGTTCTG

Function

symbol description
ppp1r13ba Predicted to enable p53 binding activity. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; hematopoietic system; musculature system; nervous system; and neural tube. Orthologous to human PPP1R13B (protein phosphatase 1 regulatory subunit 13B).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0002039 p53 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9805 Predicted to enable p53 binding activity. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; hematopoietic system; musculature system; nervous system; and neural tube. Orthologous to human PPP1R13B (protein phosphatase 1 regulatory subunit 13B).

Ensembl:

ensembl_id ENSDARG00000004377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023649 False 4449 mRNA 0.50 18 14614145 14671098
TCONS_00023650 False 905 lncRNA 0.52 3 14618475 14619554
TCONS_00023651 False 835 lncRNA 0.53 4 14618475 14621248
TCONS_00023652 False 869 processed_transcript 0.49 5 14645298 14671095
TCONS_00023653 True 231 processed_transcript 0.41 2 14664380 14691576

Neighbor

gene id symbol gene type direction distance location
XLOC_011976 sdsl coding downstream 434 14605794 ~ 14613711 (-)
XLOC_011975 daam1a coding downstream 22381 14467015 ~ 14591764 (-)
XLOC_011974 jkamp coding downstream 162427 14443406 ~ 14451718 (-)
XLOC_011972 NA coding downstream 187721 13995768 ~ 14426424 (-)
XLOC_011973 FP017160.1 coding downstream 351607 14262422 ~ 14262538 (-)
XLOC_011978 ptp4a2a coding upstream 1232 14692808 ~ 14705075 (-)
XLOC_011979 CU694317.1 coding upstream 3870 14695446 ~ 14696529 (-)
XLOC_011980 si:ch73-305o9.3 coding upstream 30595 14722171 ~ 14726824 (-)
XLOC_011981 si:ch211-266o15.1 coding upstream 39739 14731315 ~ 14780578 (-)
XLOC_011982 nid2a coding upstream 105350 14796926 ~ 14876758 (-)
XLOC_011971 FP017295.1 non-coding downstream 974916 13634412 ~ 13639229 (-)
XLOC_011970 NA non-coding downstream 1175022 13413629 ~ 13439123 (-)
XLOC_011969 BX005308.1 non-coding downstream 1273096 13340933 ~ 13341049 (-)
XLOC_011985 NA non-coding upstream 349259 15040835 ~ 15049378 (-)
XLOC_011986 NA non-coding upstream 419917 15111493 ~ 15119518 (-)
XLOC_011991 NA non-coding upstream 611261 15302837 ~ 15304923 (-)
XLOC_011993 NA non-coding upstream 724142 15415718 ~ 15428838 (-)
XLOC_012001 NA non-coding upstream 1049925 15741501 ~ 15743996 (-)

Expression


Co-expression Network