CI01000189_01391124_01392266 (HTR1D)


Basic Information

Item Value
gene id CI01000189_01391124_01392266
gene name HTR1D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 1390642 ~ 1393944 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_01391124_01392266.mRNA
AGCACGCCGGGGACTGCTTATGTTTAAGTGAAGATGTTGGCAGGTGATGTGACTGATGTGTGTGACCTGACGGCAGGAGAGTGAGCTCCGCGGTTTGGATTCTTTTCCCCACCAGGCCAAAACCAGAATGCTCGCAGGTGTCACGACACATTGTTAGTCAGACACAGGAGCTCTGGAAGCTCTATGGTGACAGGTTTCCCCTCGAGGCACAATCCTCTAGATACTCATCAATCAAAGCTTGAGCCTGAAAAGCAGAGCCCAGGGTAAAGAAATATGTTAATGGAGGAAAAACTTACTACATAAATTTACAAGTTTTTAATGAAGATATCAGAAAAATAATGAATTCCATTTGCATCTTAAGCAAGGAGAGCAGGAATCTTGATTTGAGCATGCACAATTGATTTTATTATGTGGGTTTGGCTTTGCAAGAATAAAAATTTTAATACTTTCAAGCGCTTTAGGTTTGTTCATGTAATCCTGCAAAATAGAGTGTAGGAAGATTAAGAGCTCAAAAATTGAAACAGCTGTTTCTAGCTTCTAGCTAACTACTCTGCACTAATTTAAATAAATAAATAAATAAGTAAAAGGAAGAGCGCTCTCTTCCACTCTCAATACCCACAACTGAGGTGCCCTTGAGCAAGGCATCTAACCCCCAATCGCTCCCCGGGCGCCACAGCAAAAAAACGCCTACCCACTGCTCCGGGTGTGTGTTCAAAGTGTGTGTACGCGCTTGGATGGGTGAAATGCAGAGCACAGATTCCAAGTATAGGTCACCATACTTGACCACATATCACTTTCACTTTAGAAAAAAAAAAAAACTTACCAAATAATTCTGTATGAAGTTTTACCTTTTAATGTAAGCAGTGAGAACCTAATTTGCATTATTAAAATGAATCTTCTCAGTATATTTCCACAGGTGCATCTCTTAAAGTTCAACTATTGCATATGTAGAGACTAAAATCAAGTGTTTTCTAAAGTTCTCACTCTTAATTCTCTCTTTTTTTTTCTCTCTCTCTCTCTATTCCAGATCTTCACCTGGATTGAGTCCTTTCTTCTGGAGTAGCACCTTCACATGGCCAATATTCAAAATGATTTTTACAGCGTTTTACAAAACTTTTTACAGCTTTTGGTGTTCTGGAAAACTCCAAAATCATCTCTCTCTAAATCATTTGCAGCCATCACTGGATATACAGGGAATGAACTGTTATTTCAGTCCATTTGTCTGAAACAACAGCACTTTTGCAGACCAACAGGAGAATAAATTAAAAAGTCTTCCAGCAGTTCATGAGCCAAAAGTCTAGGATCTCCAGTTCTTATGGCAGAATAAGGGACAATAAAGAAAATAATGAGCAGTGATTTAAGGGCTGAAGGAATTGTTTTTATAACTCAAAGTCAAGCAGAAAAGGTAATACTGGTTTCTTGTTTATTCTGTGGCATTTAACTTTTTTGTGTGTGTCAACATATTCCACAAAAAGCATTAGAAACAGTCACAGTATCTTCAACCATGAATTACTTCTCACATTTATCAGCCATGACCTTCACAAAGGCAAAGCATCACCAATTTCTCAAACTAGCAAACTAAATTACTCTTTCACCAGAAGACGTTTTCATGGAATAATTGATCATTTATGGTAAGAATCATGCATAGATGATATAAAGCACTGGTGAACCATGCAACATGGATCTGTTCAACAGCTCAGATGAGTTCTTCCTCATCAATGCTACAGTCAGTCCCACAACCCTGGAGTCCTGGGATGACGCTATGCCCTTCAGCCTACAGATCTCCATCTCTGCCATGCTAGCAATCGTCACTTTGGCCACTGCTCTGTCCAACGCTTTTGTGATTGCAACCATTTTCCTCACACGCAAGCTTCACACCCCCGCCAACTTCCTGATCGGCTCTCTCGCAGTGACTGACCTCCTGGTGTCCATTTTAGTCATGCCGATCAGCATTGTGTACACGGTCAGAAAGACTTGGACTCTGGGTCAGATCGTGTGCGATATCTGGCTATCATCTGATATAACGTTCTGCACAGCTTCTATCTTGCACCTGTGTGTGATCGCATTGGATCGATACTGGGCCATTACCGACGCCCTGGAATACTCAAAACGCCGCACTATGCGGCGAGCGGCGGTGATGATCGGCGTAGTGTGGGTGATCTCCGTCTCGATCTCTATGCCTCCTCTATTCTGGCGGCAGGCTAAGGCACACGAGGAGCTCACGGAGTGCATGGTCAACACCGACCAGATCTCCTATACGCTTTATTCCACATTTGGCGCCTTTTACGTGCCCACGGTCCTCTTGATGATTCTCTACGGGCGTATCTACGTGGCGGCTCGCTCCAGGATCTTTAAAACACCAGCGACCAGCGGAAAACGGTTCACCGCTGCTCAGCTCATCCAGAACTCAGCGGGCTCTTCGCTCTGCTCGCTGAATTCCACCTCTAATCAGGAGGGACATCTTCATCCTGGAGGAGGTGGAGGTGGGGGAGGAGGGTCTCCTCTTTTCACGAACAGTGTGAAAGTAAAGCTGGCCGATAGCGTACTGGAAAGAAAGCGTCTTTGTGCCGCTCGGGAGAAGAAGGCCACCAAAACTCTTGGGATTATCCTAGGTGCGTTTATAGTATGCTGGCTCCCATTCTTCGTGTTTACGCTGGTGATGGGGGTCTGTAAAGACTGTTGGTTTCATCCTGTGCTCTTTGATGTGTTCACCTGGCTGGGGTACCTCAACTCGCTCATCAATCCAGTCATCTACACTGCCTTCAACGATGACTTCAAACAAGCCTTCCACAAACTTATTAAGTTTAAAAGATGCTACTGATGTTATACTCCTGTATAACTCCTTTTGACACATTCATGACTTAATTAGCAGATTTCCTCTGAAAATATCTGAATCCTGTGAACTTTCATTGTTCATATGCTGTTGAGGACCCATCGTACCCTGCCGTTTGTTTTTCAGTGAGCTCCTAAACGCGCATACAGTGTCTGGTCGATGTAGATTACTGTTCTCATAAGACAGCTTGTAAAATATCGTGCCATATTGTTGATGCTTCCTCGTAGTTAATGAATGCATGCTAAGATTACAAATCCTTCACAAGAGAGCAATGTTCTACTGTCTTCGTAACCAATAGCTGTCTATAAACTGCCTTATTTACCAGAAACAGAGTGAAATTAATATAAAAGACACTTGATTTAAAAAGAATACCAATGAATGAAGGTTGCTCTTCCCATAGGAAAGCATATATGCGCCCCCTGAGGACCGTGATGAAGTTTATGAACATTAGCATAGACTCCCTAAATAAA

Function

symbol description
htr1d Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; smooth muscle contraction; and vasoconstriction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain. Orthologous to human HTR1D (5-hydroxytryptamine receptor 1D).

GO:

id name namespace
GO:0050795 regulation of behavior biological_process

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_01391124_01392266.mRNA True 3303 mRNA 0.43 1 1390642 1393944

Neighbor

gene id symbol gene type direction distance location
CI01000189_01342802_01344801 KDM1A coding downstream 45841 1342792 ~ 1344801 (-)
CI01000189_01321624_01323067 NA coding downstream 67254 1321447 ~ 1323388 (-)
CI01000189_01289557_01297885 NA coding downstream 92730 1289270 ~ 1297912 (-)
CI01000189_01256704_01259709 NA coding downstream 130747 1256656 ~ 1259895 (-)
CI01000189_00859327_00862617 YTHDF2 coding downstream 528025 858786 ~ 862617 (-)
CI01000189_01692825_01697453 NA coding upstream 298566 1692510 ~ 1697552 (-)
CI01000189_01765011_01768780 AP4S1 coding upstream 371018 1764962 ~ 1769294 (-)
CI01000189_01794806_01800713 COCH coding upstream 400014 1793958 ~ 1800713 (-)
CI01000189_01810663_01815039 NA coding upstream 416719 1810663 ~ 1815039 (-)
CI01000189_01818502_01830933 SCFD1 coding upstream 424453 1818397 ~ 1830933 (-)
G380348 NA non-coding downstream 4340 1385838 ~ 1386302 (-)
G380301 NA non-coding downstream 14880 1351206 ~ 1375762 (-)
G380281 NA non-coding downstream 204614 1185797 ~ 1186028 (-)
G380279 NA non-coding downstream 212109 1178245 ~ 1178533 (-)
G380277 NA non-coding downstream 213176 1177212 ~ 1177466 (-)
G380450 NA non-coding upstream 75674 1469618 ~ 1469891 (-)
G380546 NA non-coding upstream 288206 1682150 ~ 1682392 (-)
G380551 NA non-coding upstream 312117 1706061 ~ 1706286 (-)
G380554 NA non-coding upstream 312563 1706507 ~ 1708751 (-)
G380535 NA non-coding upstream 339531 1733475 ~ 1742817 (-)
G380177 NA other downstream 492202 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 625265 764674 ~ 765776 (-)
CI01000189_02961166_02963382 NA other upstream 1565164 2960570 ~ 2963454 (-)
G381317 NA other upstream 1604929 2998873 ~ 3006444 (-)
G382060 NA other upstream 2436683 3830627 ~ 3832613 (-)
G382052 NA other upstream 2491618 3885562 ~ 3892909 (-)
G382153 NA other upstream 2751646 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012162 htr1d coding NC_007128.7 CM002901.2 28166859 ~ 28198099 (-)